G78111 (pole2)


Basic Information

Item Value
gene id G78111
gene name pole2
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 4289507 ~ 4298184 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105324
tttttttctaaaaatacttaatttattatgatatattgATACACAAAAAACAGGAGGAACTTAAGAGTTGACAAACATACTGATGCAGATCTTTTTGGTAGATCTGTTATAACTATACAACAGGAAAGCCACAATCACGTAGTCCATTCAGCTTCAGAGTCCTTGCAGTTTGCTGTCCTCCACTGTTCTGTTGGATGGGTAGTACACCTTAAATGAAAAGCCACTTTTTGGGAAAGAGCCCGGGTTGATGGAGAGGCAGTCGGAGCTGGAGATGCTGAAAGGGTCGTATTTATCAGCAAAGATGATCACGTCAGGAACAGGATAGACCCTTAACGCGTAGTCATACGCCCAGAACACTGGACTGACATAAAGCGGCAGAGGAGTCAGATGACCCTGAGACAGGATGGTCTTCACAaaATGGTTGGGAATGTCGAGATTGCCACTGGGGAGTCTCACACAGTTTCTGCACATCTTGTTGACCAAGTCTTCCCGGATCACAACTATCTCCTGACTGCAGTACTGGATTCTGCAAGGGTTGGTGGTGAACACAGAGAATGGGACTCGTTGCCTAAACTCCTCTGTGATGTTTTCAGCAAGGGGAGGTCTAGGTAAAATAGTACTGGGTCCAGGGTCCTCAGGACCAGGAACAAACACAAAGCGGCTGCTGTTGTGGATGTTTGGATGTTCACAAATTAAATCAGCGAGAGCTTTCAGAGACTCTTTCATTGACTTGACCTGATTCTTGCCATACGGGGCCGAAGAGAAGTTGCCACAGAAAATGAAGCATGTGGGAGGCGCTGCTGAATAGCCTGAGAACATGGTCTGAATCTTTTCCATGACCTCCACACTGTCCAGCCAAACGTCAGAAGCAACAACAAACATGGCATCTTCATTCTCTTCCTCCAGCTGCTTCAGCTTGGCTGAGGCCTTCACTGAAGTGGTACTCGGCCCGCCGAAAAAATTGACATTACCATAATATGCCCTGGTCGTAGAGGAGGGCTCGATTGGAGGGAATCCAAAGGCATTAACATGGAAGACTGAGTCCTCATACCATCCCTCAGCCAGGACAAAGCAGGATTCTGTGTAAAGTCCACTGTGGAACTCTTTAAGTTGTGTCACCATGCCAAGAACAATAACTTCTCCCAGTTTAGCTGTGCTTCCTAAAAGAGCCTCCACAGTTTTTAACTGGAATTTATTCCTCCCTTCATCTGGGGCTGAGCCAATTACAGGAGCAGTGAAAAGTTCATGCCTATGAGTCCGCTGCTGTAAGATGGTGTAGCGCTCCCGAAAGAGTTCAGCCTTGTCTCTAGCCTGGCCACATAACGAGGGTGTAGGATGATTGGTCATATTGATAGGTACAAACTTCTTCCTTTCTGTGCTGTAGATATATCTAGGTATGTCGAAAGCTCCAATAATGTTGAAAACATTGTCTATGGTTTCATCACATGACTGACTGCAGTCCTGCACAGCTGTTTCAGCTACAGAGAGCTCAATCATGCTAGAGGACAAAGGTTGCTTTTCAACCGCATCCAATATCCGCTCGATGACGTCATCCAGCTCTAATTCATTGACAGACTCCAAGACCTCGACCAGATACCTGCTGGCttcaGGGCGGAGCATTAATCCGCGCATCTTAAATCCAGCGGAAACTTTAGTTTTCAGCCTCCGAACATCCatctcctcttcttctcctgctgctgctgctcgcgGAAAAACTGCAGCTTCCGCGCGCCTTCATTCGAAAACTTCCGTCCTGAAAACGCGACTCCCTGTTTaac

Function

symbol description
pole2 Predicted to enable DNA binding activity. Predicted to be involved in DNA-dependent DNA replication and error-prone translesion synthesis. Predicted to act upstream of or within DNA replication. Predicted to be located in nucleus. Predicted to be part of epsilon DNA polymerase complex. Is expressed in several structures, including eye; immature eye; intestinal bulb primordium; neural plate; and ventricular zone. Orthologous to human POLE2 (DNA polymerase epsilon 2, accessory subunit).

NR:

description
PREDICTED: DNA polymerase epsilon subunit 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105324 True 1778 TUCP 0.47 18 4289507 4298184

Neighbor

gene id symbol gene type direction distance location
LOC103044683 NA coding upstream 278249 4007515 ~ 4011258 (+)
ap4s1 ap4s1,LOC107582370,LOC107590907,LOC107733114 coding upstream 373730 3907898 ~ 3915777 (+)
coch coch coding upstream 410189 3868553 ~ 3879318 (+)
LOC103022404 LOC108430680 coding upstream 431052 3853606 ~ 3858455 (+)
scfd1 scfd1,LOC107697716,LOC107719485 coding upstream 436383 3825628 ~ 3853124 (+)
klhdc1 klhdc1 coding downstream 612 4298796 ~ 4308409 (+)
dnaaf2 NA coding downstream 12133 4310317 ~ 4313788 (+)
klhdc2 klhdc2 coding downstream 24370 4322554 ~ 4329505 (+)
mok mok coding downstream 56572 4354756 ~ 4364804 (+)
LOC103042329 NA coding downstream 82123 4380307 ~ 4387505 (+)
LOC111193172 NA non-coding upstream 3276 4278111 ~ 4286231 (+)
G78066 NA non-coding upstream 130190 4158517 ~ 4159317 (+)
G78068 NA non-coding upstream 131642 4154743 ~ 4157865 (+)
G78060 NA non-coding upstream 175131 4081395 ~ 4114376 (+)
G78059 NA non-coding upstream 184632 4045437 ~ 4104875 (+)
G78117 NA non-coding downstream 19870 4318054 ~ 4320327 (+)
G78122 nemf,LOC102775640 non-coding downstream 53269 4351453 ~ 4353277 (+)
G78172 NA non-coding downstream 179682 4477866 ~ 4490654 (+)
G78283 NA non-coding downstream 906898 5205082 ~ 5207413 (+)
G78282 NA non-coding downstream 994571 5292755 ~ 5294206 (+)
g2e3 g2e3 other upstream 464635 3765780 ~ 3824872 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other upstream 929763 3322085 ~ 3359744 (+)
G77722 NA other upstream 1311413 2900134 ~ 2978094 (+)
LOC103031026 NA other upstream 1825186 2458445 ~ 2464321 (+)
LOC103033080 akt1,zbtb42,LOC107716055,LOC106610857,LOC106582697 other upstream 2280089 1912532 ~ 2009418 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other downstream 1153931 5452115 ~ 5530055 (+)
LOC103024862 LOC108430185 other downstream 2559170 6857354 ~ 6872405 (+)
G78671 LOC107659230,LOC107583602 other downstream 3296523 7594707 ~ 7607664 (+)
fam167b LOC108433301,LOC101067225 other downstream 3358123 7656307 ~ 7729001 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 4231670 8529854 ~ 8549968 (+)

Expression


Co-expression Network