G78122 (nemf,LOC102775640)


Basic Information

Item Value
gene id G78122
gene name nemf,LOC102775640
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 4351453 ~ 4353277 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105341
TTTCATGGCAAAACCGGAGGGCATGAGATTTTTGGGCCATTCAAACTCTGTGGAGTGAATTCGTATTCCAGACTCAATCAGTAATACTGCTTTACTGTCCGgcTTCTGGAGTCGTATGAGATAGGTCTTGTTGTCAATGTCATAGACATTGTACACTCGCATCCCGACATAGTTGGCGTTAATTTCAGAGATCACTGCTCTGATATCCACTGTGTTAAACCTGCTTTTCATCCTgtcagaaagaaaaaacacaggttACACTTCTTCTCATCTGCTCTTCTCCGGAGACTCAACACCACACAGCACAAGACTGCCACTGCGCATGCGTGTCATACCCTACGGAagcctgtttgtttttt

Function

symbol description
nemf Predicted to enable ribosomal large subunit binding activity and tRNA binding activity. Involved in nuclear export. Predicted to be located in nucleus. Predicted to be part of RQC complex.

NR:

description
PREDICTED: nuclear export mediator factor NEMF

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105341 True 359 lncRNA 0.45 3 4351453 4353277

Neighbor

gene id symbol gene type direction distance location
klhdc2 klhdc2 coding upstream 21948 4322554 ~ 4329505 (+)
dnaaf2 NA coding upstream 37665 4310317 ~ 4313788 (+)
klhdc1 klhdc1 coding upstream 43044 4298796 ~ 4308409 (+)
LOC103044683 NA coding upstream 340195 4007515 ~ 4011258 (+)
ap4s1 ap4s1,LOC107582370,LOC107590907,LOC107733114 coding upstream 435676 3907898 ~ 3915777 (+)
mok mok coding downstream 1479 4354756 ~ 4364804 (+)
LOC103042329 NA coding downstream 27030 4380307 ~ 4387505 (+)
LOC103040906 ppp2r5c,LOC106937856 coding downstream 113087 4466364 ~ 4486907 (+)
begain NA coding downstream 220999 4574276 ~ 4590198 (+)
wars wars,LOC107088074 coding downstream 248664 4601941 ~ 4609185 (+)
G78117 NA non-coding upstream 31126 4318054 ~ 4320327 (+)
LOC111193172 NA non-coding upstream 65222 4278111 ~ 4286231 (+)
G78066 NA non-coding upstream 192136 4158517 ~ 4159317 (+)
G78068 NA non-coding upstream 193588 4154743 ~ 4157865 (+)
G78060 NA non-coding upstream 237077 4081395 ~ 4114376 (+)
G78172 NA non-coding downstream 124589 4477866 ~ 4490654 (+)
G78283 NA non-coding downstream 851805 5205082 ~ 5207413 (+)
G78282 NA non-coding downstream 939478 5292755 ~ 5294206 (+)
G78397 NA non-coding downstream 2203956 6557233 ~ 6563936 (+)
G78408 NA non-coding downstream 2271424 6624701 ~ 6627742 (+)
G78111 pole2 other upstream 53269 4289507 ~ 4298184 (+)
g2e3 g2e3 other upstream 526581 3765780 ~ 3824872 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other upstream 991709 3322085 ~ 3359744 (+)
G77722 NA other upstream 1373359 2900134 ~ 2978094 (+)
LOC103031026 NA other upstream 1887132 2458445 ~ 2464321 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other downstream 1098838 5452115 ~ 5530055 (+)
LOC103024862 LOC108430185 other downstream 2504077 6857354 ~ 6872405 (+)
G78671 LOC107659230,LOC107583602 other downstream 3241430 7594707 ~ 7607664 (+)
fam167b LOC108433301,LOC101067225 other downstream 3303030 7656307 ~ 7729001 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 4176577 8529854 ~ 8549968 (+)

Expression


Co-expression Network