G78603 (iars2,LOC107654863,LOC107582886,LOC107715938)


Basic Information

Item Value
gene id G78603
gene name iars2,LOC107654863,LOC107582886,LOC107715938
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7319609 ~ 7321250 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105946
CCCTCCAGGTTGATGAGGAAGCTCCCACTGTTGGTGATGGCATCAGAAGGCAGGTCCCTGGGGAGAGTGCTGGTCAGCGTGGTGCGAGATGCCATCATCAGCTCCGTCAGCTGAGAGCAGGTGGATGTGGGCTCCTCCTCCATGAGCTCAAAGAGAAGACCAGGCTCGATAGCGATGGTGAGGTCGTACTCTACTGCGTTGCGTCCTGGGATAGACGATAGGAACGAGTCTCTGATAGCACACGCCCCCTCCACTGCCTCCTCCAATCCTGGCTTCCTCCACACAGAGCTGCTTTTAACCCAGCCGCTCCGGAACAGAGTCTCTCCTTc

Function

symbol description
iars2 Predicted to enable isoleucine-tRNA ligase activity. Predicted to be involved in isoleucyl-tRNA aminoacylation and mitochondrial translation. Predicted to act upstream of or within tRNA aminoacylation for protein translation. Predicted to be active in mitochondrion. Orthologous to human IARS2 (isoleucyl-tRNA synthetase 2, mitochondrial).

NR:

description
PREDICTED: isoleucine--tRNA ligase, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105946 True 329 lncRNA 0.58 2 7319609 7321250

Neighbor

gene id symbol gene type direction distance location
rab3gap2 rab3gap2,LOC107659254 coding upstream 7317 7284848 ~ 7312292 (+)
LOC103030509 ppp1cb,LOC103030509,LOC100692170 coding upstream 42506 7255113 ~ 7277103 (+)
LOC111193178 NA coding upstream 74857 7226490 ~ 7244752 (+)
hhat hhat coding upstream 246101 6974915 ~ 7073508 (+)
LOC103028981 NA coding upstream 425032 6886115 ~ 6894577 (+)
rtn4ip1 rtn4ip1,LOC107659252 coding downstream 89179 7410429 ~ 7443721 (+)
lck lck,LOC107716006,LOC107654872,LOC107721256,LOC108270195 coding downstream 361591 7682841 ~ 7744462 (+)
LOC103024901 NA coding downstream 438599 7759849 ~ 7764677 (+)
LOC103024072 pabpc4,LOC107654874,LOC107716002 coding downstream 445319 7766569 ~ 7799259 (+)
ppie ppie coding downstream 480970 7802220 ~ 7808950 (+)
G78602 NA non-coding upstream 35745 7282651 ~ 7283864 (+)
LOC111193179 NA non-coding upstream 64692 7252132 ~ 7254917 (+)
G78542 NA non-coding upstream 350430 6968866 ~ 6969179 (+)
G78531 NA non-coding upstream 391553 6927354 ~ 6928056 (+)
G78528 NA non-coding upstream 395587 6917616 ~ 6924022 (+)
LOC103029755 NA non-coding downstream 21943 7343193 ~ 7346450 (+)
G78646 NA non-coding downstream 68215 7389465 ~ 7389689 (+)
G78668 NA non-coding downstream 226206 7547456 ~ 7552368 (+)
LOC103026041 NA non-coding downstream 305747 7626997 ~ 7628892 (+)
G78725 NA non-coding downstream 425771 7747021 ~ 7748434 (+)
LOC103024862 LOC108430185 other upstream 447204 6857354 ~ 6872405 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other upstream 1789554 5452115 ~ 5530055 (+)
G78111 pole2 other upstream 3021425 4289507 ~ 4298184 (+)
g2e3 g2e3 other upstream 3494737 3765780 ~ 3824872 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other upstream 3959865 3322085 ~ 3359744 (+)
G78671 LOC107659230,LOC107583602 other downstream 273457 7594707 ~ 7607664 (+)
fam167b LOC108433301,LOC101067225 other downstream 335057 7656307 ~ 7729001 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 1208604 8529854 ~ 8549968 (+)
G78818 NA other downstream 1214666 8535916 ~ 8537682 (+)
spata17 NA other downstream 2174199 9495449 ~ 9554725 (+)

Expression


Co-expression Network