LOC103029755


Basic Information

Item Value
gene id LOC103029755
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7343193 ~ 7346450 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105961
gttctGGACTGACTGAGCTGCGACCTCAGAGACAGCaggctgtggtgtgtgtgtgtgtggagcacaGGAACCCTGAAGATGTCTAAAATACTAACTCTGTGCATTGGAGTGCTTCTGCTAGCCATGCAATTCTCCACACAGGTCGAAACCACAGGTAACAACACCATAGTTGCTACCACTGTGACTACCAAAAATGCAACCAGTGCAGGCTCTAGGCTGCTGCCTGCTGAACTTATCCTGCTTTTGCCCGTTGGCGTGCTGGGTTCAGTCCTTCACGGCCGCTGGTAAGCGCAGGGGAAGGCACCCTGGCTAAACCGAAGCGGCCAAGAAAGACTTGAGGCGGTCAGTGGCAAAGAGCGTACTTTTCTAAGTTCTCAAAAGGAGAAGGCCTTCGGTGGCGAGGGAAGAGAAGACCTGACTGATTTgtATAGGCCGCCAAAAGTGCGATTTCTCAGTGAACTGTCAATCAATACTTTAGAAATCAACATTGCTTGATTGATGCAAATTAGGAAGTGAACCCTGTCCTGTCAAATTTTTCTCCTTAAAAAAATTCAACTTAAAATTGTCAAACTAGGTGCTTAACATTAAATGTGGCACCCCATTTTGAGTCAAGGTtctttaatggcattttttgttattataccAATGTAGTCACTTAAATGTGctcagtttttttatgtatgaattgttAATGTACTCTAATTATCATTGTACACAATAAAAGACCATTCTATCTGTTTACCA
>XR_455482.3
AAagctggggtgtgtgtgtgctgagaggagttctGGACTGACTGAGCTGCGACCTCAGAGACAGCaggctgtggtgtgtgtgtgtgtggagcacaGGAACCCTGAAGATGTCTAAAATACTAACTCTGTGCATTGGAGTGCTTCTGCTAGCCATGCAATTCTCCACACAGGTCGAAACCACAGGTAACAACACCATAGTTGCTACCACTGTGACTACCAAAAATGCAACCAGTGCAGGCTCTAGGCTGCTGCCTGCTGAACTTATCCTGCTTTTGCCCGTTGGCGTGCTGGGTTCAGTCCTTCACGGCCGCTGGTAAGCGCAGGGGAAGGCACCCTGGCTAAACCGAAGCGGCCAAGAAAGACTTGAGGCGGTCAGTGGCAAAGAGCGTACTTTTCTAAGTTCTCAAAAGGAGAAGGCCTTCGGTGGCGAGGGAAGAGAAGACCTGACTGATTTTGTCGAGGaatgttttcattttctgaattATGGTCTTGCAGCTTCTCACATATGAAGCTACACTTGGATAACCAACCTGGTCTGCTGAAATTGAAGGCCGAGACGATCGAGGATGTACAAAATTGGGctctttgctgtgttttttcgtATAGGCCGCCAAAAGTGCGATTTCTCAGTGAACTGTCAATCAATACTTTAGAAATCAACATTGCTTGATTGATGCAAATTAGGAAGTGAACCCTGTCCTGTCAAATTTTTCTCCTTAAAAAAATTCAACTTAAAATTGTCAAACTAGGTGCTTAACATTAAATGTGGCACCCCATTTTGAGTCAAGGTtctttaatggcattttttgttattataccAATGTAGTCACTTAAATGTGctcagtttttttatgtatgaattgttAATGTACTCTAATTATCATTGTACACAATAAAAGACCATTCTATCTGTTTACCA

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
TU105961 False 744 lncRNA 0.44 3 7343222 7346450
XR_455482.3 True 919 lncRNA 0.44 2 7343193 7346450

Neighbor

gene id symbol gene type direction distance location
rab3gap2 rab3gap2,LOC107659254 coding upstream 30901 7284848 ~ 7312292 (+)
LOC103030509 ppp1cb,LOC103030509,LOC100692170 coding upstream 66090 7255113 ~ 7277103 (+)
LOC111193178 NA coding upstream 98441 7226490 ~ 7244752 (+)
hhat hhat coding upstream 269685 6974915 ~ 7073508 (+)
LOC103028981 NA coding upstream 448616 6886115 ~ 6894577 (+)
rtn4ip1 rtn4ip1,LOC107659252 coding downstream 63979 7410429 ~ 7443721 (+)
lck lck,LOC107716006,LOC107654872,LOC107721256,LOC108270195 coding downstream 336391 7682841 ~ 7744462 (+)
LOC103024901 NA coding downstream 413399 7759849 ~ 7764677 (+)
LOC103024072 pabpc4,LOC107654874,LOC107716002 coding downstream 420119 7766569 ~ 7799259 (+)
ppie ppie coding downstream 455770 7802220 ~ 7808950 (+)
G78603 iars2,LOC107654863,LOC107582886,LOC107715938 non-coding upstream 21943 7319609 ~ 7321250 (+)
G78602 NA non-coding upstream 59329 7282651 ~ 7283864 (+)
LOC111193179 NA non-coding upstream 88276 7252132 ~ 7254917 (+)
G78542 NA non-coding upstream 374014 6968866 ~ 6969179 (+)
G78531 NA non-coding upstream 415137 6927354 ~ 6928056 (+)
G78646 NA non-coding downstream 43015 7389465 ~ 7389689 (+)
G78668 NA non-coding downstream 201006 7547456 ~ 7552368 (+)
LOC103026041 NA non-coding downstream 280547 7626997 ~ 7628892 (+)
G78725 NA non-coding downstream 400571 7747021 ~ 7748434 (+)
G78728 NA non-coding downstream 404964 7751414 ~ 7758200 (+)
LOC103024862 LOC108430185 other upstream 470788 6857354 ~ 6872405 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other upstream 1813138 5452115 ~ 5530055 (+)
G78111 pole2 other upstream 3045009 4289507 ~ 4298184 (+)
g2e3 g2e3 other upstream 3518321 3765780 ~ 3824872 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other upstream 3983449 3322085 ~ 3359744 (+)
G78671 LOC107659230,LOC107583602 other downstream 248257 7594707 ~ 7607664 (+)
fam167b LOC108433301,LOC101067225 other downstream 309857 7656307 ~ 7729001 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 1183404 8529854 ~ 8549968 (+)
G78818 NA other downstream 1189466 8535916 ~ 8537682 (+)
spata17 NA other downstream 2148999 9495449 ~ 9554725 (+)

Expression


Co-expression Network