G78646


Basic Information

Item Value
gene id G78646
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7389465 ~ 7389689 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU105997
AATTACGGTCCTGTAATGCTAACAGATAATGTTATCAGCAATGCTGGACAGGAAGTGATGGTTTTCTGTTCTGTGTTTCTGGTGAAAGTGTGCTCCAGAGGTCAAACTCAAgttgcctacaggatgctgcctacaggacgctGTTGGTacactaaggtgtttaaaaactctagcagcactgctgtatccgatccacccccacccaccacccaaatatttGCTGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU105997 True 225 lncRNA 0.46 1 7389465 7389689

Neighbor

gene id symbol gene type direction distance location
rab3gap2 rab3gap2,LOC107659254 coding upstream 77173 7284848 ~ 7312292 (+)
LOC103030509 ppp1cb,LOC103030509,LOC100692170 coding upstream 112362 7255113 ~ 7277103 (+)
LOC111193178 NA coding upstream 144713 7226490 ~ 7244752 (+)
hhat hhat coding upstream 315957 6974915 ~ 7073508 (+)
LOC103028981 NA coding upstream 494888 6886115 ~ 6894577 (+)
rtn4ip1 rtn4ip1,LOC107659252 coding downstream 20740 7410429 ~ 7443721 (+)
lck lck,LOC107716006,LOC107654872,LOC107721256,LOC108270195 coding downstream 293152 7682841 ~ 7744462 (+)
LOC103024901 NA coding downstream 370160 7759849 ~ 7764677 (+)
LOC103024072 pabpc4,LOC107654874,LOC107716002 coding downstream 376880 7766569 ~ 7799259 (+)
ppie ppie coding downstream 412531 7802220 ~ 7808950 (+)
LOC103029755 NA non-coding upstream 43015 7343193 ~ 7346450 (+)
G78603 iars2,LOC107654863,LOC107582886,LOC107715938 non-coding upstream 68215 7319609 ~ 7321250 (+)
G78602 NA non-coding upstream 105601 7282651 ~ 7283864 (+)
LOC111193179 NA non-coding upstream 134548 7252132 ~ 7254917 (+)
G78542 NA non-coding upstream 420286 6968866 ~ 6969179 (+)
G78668 NA non-coding downstream 157767 7547456 ~ 7552368 (+)
LOC103026041 NA non-coding downstream 237308 7626997 ~ 7628892 (+)
G78725 NA non-coding downstream 357332 7747021 ~ 7748434 (+)
G78728 NA non-coding downstream 361725 7751414 ~ 7758200 (+)
G78753 NA non-coding downstream 594892 7984581 ~ 7986723 (+)
LOC103024862 LOC108430185 other upstream 517060 6857354 ~ 6872405 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other upstream 1859410 5452115 ~ 5530055 (+)
G78111 pole2 other upstream 3091281 4289507 ~ 4298184 (+)
g2e3 g2e3 other upstream 3564593 3765780 ~ 3824872 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other upstream 4029721 3322085 ~ 3359744 (+)
G78671 LOC107659230,LOC107583602 other downstream 205018 7594707 ~ 7607664 (+)
fam167b LOC108433301,LOC101067225 other downstream 266618 7656307 ~ 7729001 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 1140165 8529854 ~ 8549968 (+)
G78818 NA other downstream 1146227 8535916 ~ 8537682 (+)
spata17 NA other downstream 2105760 9495449 ~ 9554725 (+)

Expression


Co-expression Network