G78668


Basic Information

Item Value
gene id G78668
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7547456 ~ 7552368 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106026
AGCTGCCAGCAGTTTATTGATGAGAGCAGGATGGCATATGGCAAACATGCAGCGTTTACATGATCAGTGTGTACCCTGTGCTTTAGGCAAACTCAGGCTGATGGAGGctacaaaaagaaacaaaaaaaaggcacaaaactTCAGAACATTCATTATCTCAGACATCAGTGGAAGAAGGGAACACCTCTCTTCCTCCAAATGGGAACACGTTAAACTGAACGAAAccacaatacaacaccatataACACTGATCCTCAGAAGGCACCTGATTTAGTTCAGAGGACCAGGATTCACGACGGATACAAGCAAACGAATCGTTTGTCTAAGTGTGCTGAATATGTCATTATATTCCACTCCTTCATATGTACTGTAACTGCAGGTTAGTTTAGCCAGGCATCTTATCAGTGGTTCTCTTTATCTTGGACTTTGATAAACCAAAAACTCTTTGCATACTGGATTTTGTGATGTTACCAAAATCTTCTCCACAGTTATGTAACAGGAGATTTCTCAAAAGTCAGATTTCTTAGTTAGAGGACATTGTTCAAAAGGGGTATTGGACAATACTGATATATTAAACTCTAAATCACTATATTTTGTTGTGATGATTGAAATCACAGTTATATAATGCCTTTCTCGACATCAAGGCACGCATTACAATCACATTCCACACTCAACTAACCAACACACATCAGCACTTAACTACAAATGCAGACCtgaaagcagcagccaatcacataCAGCATACTCTTAACTGGAAATGACTGTCCACCTGGAGAACTGTATAAGAGACTTAGCCATTGACAGAGCCAGGACAGAGTGctaatccatatctgggcatacagtCATATATGCGAACACccatacaaatacacatatgCTCAAGTGTGTCcattttttctgggcaatttttGAACATCCAATTTATCTGATCATCTTGTTtctttttggactgtgggataAAAGCAGTTACTGGGGGAAATCTCCACAAACACGTGGAGATAATGCAAAGTCCTTCCACATCAACAGAGACTTGAACCCACTGGAAGAAGAACATTGTATCTACTAAACCACTGTACTGTTTTGCAATACAGTACTAATTttcaaatatacagtacagacttCTAATTTTTAACCTTTATTGTAATTAAGCAGTAAACTGTTGCTGCATTCAAGTGGTGAAGGAACTGGGAAATACCATTTGTACCACTTCACTGACTGTACAATTTATGGAGTGGATTTTGTGTATCGAGATGTGATGAATACCACAATCTTGTACCTTATCTGCATGTGTTCaaactaagcttttttttttttttaatcaaatgttcAGGTCATTACACTCAAACACTTATTTGTGTTAAGTGGGCTGATCTACTGACAAAGTGCCTGGACACAGTACACAGTAAAGTCATAATTACTTAGTAGTTAACCATCTGGGATGGACAAACCTCTGTTGAGCTCACAAAAGCAGCATATGTTcagaaaataaaaccaaaaactgtaaaatctgttttttttactgtttctcaGTAATATAGACAGTGTACTGCTGACCAGAGAACACAGATCAGACATCATCTTACTACATGAGAAATCCCCTTGACCTTCACTGTGGGAACTTTTCTGAatacagcagcagcttcagctcaACATAAACCTGCATCGTTCTTCACTCAGTAAGAAAGCAGGTTGGTAAGTTTAGCTGATGCTGTGTAGAGTTGGCATAAGCACTTGCAGCCATTGCCTCCAGCTCTGCCTCTTGCTTTCTAACCTACCCTGGAGTGGAACAAGAACAGAAAGAACTTCTTATACTTCTTGCAGCACTTTTAGACAAgccttcatttatttaaagaagtttattctttattttagacTGCAGCACCCTGCTATATCCACCAAAGTAAATGTTCAATACAAAttcaaaattatattttcttcttcttttattttttccttttaccgTTGACTTTAAATGAAAGGCTAAATGAGACATCGCATTTTACACCCATAAGAAAATGAGGCCTGAGTGAGGGCTTTTCCTAGGTGCGAATTTTAATACTAGATGACACCTCTGGCCTTAGTCATTTTCTTATGGGTGTAAAATGCGATGTCTCATTT

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU106026 True 2118 lncRNA 0.38 2 7547456 7552368

Neighbor

gene id symbol gene type direction distance location
rtn4ip1 rtn4ip1,LOC107659252 coding upstream 103735 7410429 ~ 7443721 (+)
rab3gap2 rab3gap2,LOC107659254 coding upstream 235164 7284848 ~ 7312292 (+)
LOC103030509 ppp1cb,LOC103030509,LOC100692170 coding upstream 270353 7255113 ~ 7277103 (+)
LOC111193178 NA coding upstream 302704 7226490 ~ 7244752 (+)
hhat hhat coding upstream 473948 6974915 ~ 7073508 (+)
lck lck,LOC107716006,LOC107654872,LOC107721256,LOC108270195 coding downstream 130473 7682841 ~ 7744462 (+)
LOC103024901 NA coding downstream 207481 7759849 ~ 7764677 (+)
LOC103024072 pabpc4,LOC107654874,LOC107716002 coding downstream 214201 7766569 ~ 7799259 (+)
ppie ppie coding downstream 249852 7802220 ~ 7808950 (+)
erich1 NA coding downstream 862839 8415207 ~ 8442555 (+)
G78646 NA non-coding upstream 157767 7389465 ~ 7389689 (+)
LOC103029755 NA non-coding upstream 201006 7343193 ~ 7346450 (+)
G78603 iars2,LOC107654863,LOC107582886,LOC107715938 non-coding upstream 226206 7319609 ~ 7321250 (+)
G78602 NA non-coding upstream 263592 7282651 ~ 7283864 (+)
LOC111193179 NA non-coding upstream 292539 7252132 ~ 7254917 (+)
LOC103026041 NA non-coding downstream 74629 7626997 ~ 7628892 (+)
G78725 NA non-coding downstream 194653 7747021 ~ 7748434 (+)
G78728 NA non-coding downstream 199046 7751414 ~ 7758200 (+)
G78753 NA non-coding downstream 432213 7984581 ~ 7986723 (+)
G78760 NA non-coding downstream 442259 7994627 ~ 7996807 (+)
LOC103024862 LOC108430185 other upstream 675051 6857354 ~ 6872405 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other upstream 2017401 5452115 ~ 5530055 (+)
G78111 pole2 other upstream 3249272 4289507 ~ 4298184 (+)
g2e3 g2e3 other upstream 3722584 3765780 ~ 3824872 (+)
traf3 traf3,LOC107719479,LOC107694716,LOC107733154,LOC107590913 other upstream 4187712 3322085 ~ 3359744 (+)
G78671 LOC107659230,LOC107583602 other downstream 42339 7594707 ~ 7607664 (+)
fam167b LOC108433301,LOC101067225 other downstream 103939 7656307 ~ 7729001 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 977486 8529854 ~ 8549968 (+)
G78818 NA other downstream 983548 8535916 ~ 8537682 (+)
spata17 NA other downstream 1943081 9495449 ~ 9554725 (+)

Expression


Co-expression Network