G78728


Basic Information

Item Value
gene id G78728
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7751414 ~ 7758200 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106120
gttttttcatgtttttggagAGAACGATGGCTATTATTCCTCCAATAATGCCCTGCAGGTCCCAGCAAGACAGATCCATGAGTCCTGCTACGAGAGCGATGATGTTGGTGATGGCGTATTCTAAGGTGGAAAACTGAGCGCTCACTTTCACATCCCTCAGCACACTGCCCTGCATCAGGGCCCCCAGCAAGAAGTTCACATGGCCCGCCAGCACCAAGCCCAACCCCATCTTCATGAGGATCTTCTCATCCTTCAGACTTCTGCAGCACAGccatgttctcctcctccagccccggctttatatatttaactcattctaactttaaaaagtaaaaaaacagtcaaattgCCCTGCAGTgacacacacagctccacatTCTTCCTCCCTTTCCGCGTACCTGCC

Function

NR:

description
sodium/potassium/calcium exchanger 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106120 True 403 lncRNA 0.49 3 7751414 7758200

Neighbor

gene id symbol gene type direction distance location
lck lck,LOC107716006,LOC107654872,LOC107721256,LOC108270195 coding upstream 6952 7682841 ~ 7744462 (+)
rtn4ip1 rtn4ip1,LOC107659252 coding upstream 307693 7410429 ~ 7443721 (+)
rab3gap2 rab3gap2,LOC107659254 coding upstream 439122 7284848 ~ 7312292 (+)
LOC103030509 ppp1cb,LOC103030509,LOC100692170 coding upstream 474311 7255113 ~ 7277103 (+)
LOC111193178 NA coding upstream 506662 7226490 ~ 7244752 (+)
LOC103024901 NA coding downstream 1649 7759849 ~ 7764677 (+)
LOC103024072 pabpc4,LOC107654874,LOC107716002 coding downstream 8369 7766569 ~ 7799259 (+)
ppie ppie coding downstream 44020 7802220 ~ 7808950 (+)
erich1 NA coding downstream 657007 8415207 ~ 8442555 (+)
LOC103031442 LOC103359616 coding downstream 711401 8469601 ~ 8507161 (+)
G78725 NA non-coding upstream 2980 7747021 ~ 7748434 (+)
LOC103026041 NA non-coding upstream 122522 7626997 ~ 7628892 (+)
G78668 NA non-coding upstream 199046 7547456 ~ 7552368 (+)
G78646 NA non-coding upstream 361725 7389465 ~ 7389689 (+)
LOC103029755 NA non-coding upstream 404964 7343193 ~ 7346450 (+)
G78753 NA non-coding downstream 226381 7984581 ~ 7986723 (+)
G78760 NA non-coding downstream 236427 7994627 ~ 7996807 (+)
G78786 NA non-coding downstream 524740 8282940 ~ 8332434 (+)
G78792 NA non-coding downstream 597884 8356084 ~ 8356486 (+)
G78794 NA non-coding downstream 648960 8407160 ~ 8407552 (+)
fam167b LOC108433301,LOC101067225 other upstream 22413 7656307 ~ 7729001 (+)
G78671 LOC107659230,LOC107583602 other upstream 143750 7594707 ~ 7607664 (+)
LOC103024862 LOC108430185 other upstream 879009 6857354 ~ 6872405 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other upstream 2221359 5452115 ~ 5530055 (+)
G78111 pole2 other upstream 3453230 4289507 ~ 4298184 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 771654 8529854 ~ 8549968 (+)
G78818 NA other downstream 777716 8535916 ~ 8537682 (+)
spata17 NA other downstream 1737249 9495449 ~ 9554725 (+)
LOC103029457 LOC108441045 other downstream 2124806 9883006 ~ 9955038 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other downstream 2779879 10538079 ~ 10556868 (+)

Expression


Co-expression Network