G78792


Basic Information

Item Value
gene id G78792
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 8356084 ~ 8356486 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106201
gtttttccttgtccttatatgataatgaaggggcTGTCCAGCAATGATGTCACGGTGTCTCagcattcctattggttgaTTGATGTCAGATACCATATATTGATTGTACATGTTTTGCCCGTTTGACGGTTACTTTGGTAACGTGGGAGATTATATAATAAAGATCATTTAAATCGTAATACAGACTATAATCCATTTCTTTGAGGAGAGCAGCTGCTTCTCTGAGCAGATCCAATACTGAACTTCACCCCGACATttcagctcctctctctctgggctTGATTGCTAAGCCTGTACGTGAAAAACACGCCCCCTTCATTATCATATTAGGACAAGGaaaaaacgaaataaataaattgggaaataaatgaatgcagaaataaataaatcggaaaataaatta
>TU106204
ATGATGTCACGGTGTCTCagcattcctattggttgaTTGATGTCAGATACCATATATTGATTGTACATGTTTTGCCCGTTTGACGGTTACTTTGGTAACGTGGGAGATTATATAATAAAGATCATTTAAATCGTAATACAGACTATAATCCATTTCTTTGAGGAGAGCAGCTGCTTCTCTGAGCAGATCCAATACTGAACTTCACCCCGACATttcagctcctctctctctgggctTGATTGCTAAGCCTGTACGTGAAAAACACGCCCCCTTCATTATCATATTAGGACAAGGaaaaaacgaaataaataaattgggaaataaatgaatgcagaaataaataaatcggaaaataaatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106201 True 403 lncRNA 0.37 1 8356084 8356486
TU106204 False 360 lncRNA 0.37 1 8356127 8356486

Neighbor

gene id symbol gene type direction distance location
ppie ppie coding upstream 547134 7802220 ~ 7808950 (+)
LOC103024072 pabpc4,LOC107654874,LOC107716002 coding upstream 556825 7766569 ~ 7799259 (+)
LOC103024901 NA coding upstream 591407 7759849 ~ 7764677 (+)
lck lck,LOC107716006,LOC107654872,LOC107721256,LOC108270195 coding upstream 611622 7682841 ~ 7744462 (+)
rtn4ip1 rtn4ip1,LOC107659252 coding upstream 912363 7410429 ~ 7443721 (+)
erich1 NA coding downstream 58721 8415207 ~ 8442555 (+)
LOC103031442 LOC103359616 coding downstream 113115 8469601 ~ 8507161 (+)
hmgcl hmgcl,LOC107583590,LOC107721118,LOC107670875,LOC107715992 coding downstream 195962 8552448 ~ 8566788 (+)
trmt61b NA coding downstream 266915 8623401 ~ 8634193 (+)
greb1 greb1,LOC107719472,LOC107697724,LOC107590942 coding downstream 1409680 9766166 ~ 9819445 (+)
G78786 NA non-coding upstream 23650 8282940 ~ 8332434 (+)
G78760 NA non-coding upstream 359277 7994627 ~ 7996807 (+)
G78753 NA non-coding upstream 369361 7984581 ~ 7986723 (+)
G78728 NA non-coding upstream 597884 7751414 ~ 7758200 (+)
G78725 NA non-coding upstream 607650 7747021 ~ 7748434 (+)
G78794 NA non-coding downstream 50674 8407160 ~ 8407552 (+)
G78797 NA non-coding downstream 106938 8463424 ~ 8485261 (+)
G78806 NA non-coding downstream 120024 8476510 ~ 8510824 (+)
G78808 NA non-coding downstream 121520 8478006 ~ 8479587 (+)
G78810 NA non-coding downstream 155911 8512397 ~ 8512647 (+)
fam167b LOC108433301,LOC101067225 other upstream 627083 7656307 ~ 7729001 (+)
G78671 LOC107659230,LOC107583602 other upstream 748420 7594707 ~ 7607664 (+)
LOC103024862 LOC108430185 other upstream 1483679 6857354 ~ 6872405 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other upstream 2826029 5452115 ~ 5530055 (+)
G78111 pole2 other upstream 4057900 4289507 ~ 4298184 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 173368 8529854 ~ 8549968 (+)
G78818 NA other downstream 179430 8535916 ~ 8537682 (+)
spata17 NA other downstream 1138963 9495449 ~ 9554725 (+)
LOC103029457 LOC108441045 other downstream 1526520 9883006 ~ 9955038 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other downstream 2181593 10538079 ~ 10556868 (+)

Expression


Co-expression Network