G78794


Basic Information

Item Value
gene id G78794
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 8407160 ~ 8407552 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106207
ttgccccgtttttctgcgctagaaatgcgcactctctccgcttttagactctttgctctgtttttctgcgctagaaatgcgcaccctctccgcttttagactctttgccctgtttttctgcgctagaaatgcgcactctctctgcttttagactctttgccctgtttttctgtgctagaaatgtgcaccctctccgcttttagactctttggcctgattttctgcgctagaaatgc

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106207 True 236 lncRNA 0.47 2 8407160 8407552

Neighbor

gene id symbol gene type direction distance location
ppie ppie coding upstream 598210 7802220 ~ 7808950 (+)
LOC103024072 pabpc4,LOC107654874,LOC107716002 coding upstream 607901 7766569 ~ 7799259 (+)
LOC103024901 NA coding upstream 642483 7759849 ~ 7764677 (+)
lck lck,LOC107716006,LOC107654872,LOC107721256,LOC108270195 coding upstream 662698 7682841 ~ 7744462 (+)
rtn4ip1 rtn4ip1,LOC107659252 coding upstream 963439 7410429 ~ 7443721 (+)
erich1 NA coding downstream 7655 8415207 ~ 8442555 (+)
LOC103031442 LOC103359616 coding downstream 62049 8469601 ~ 8507161 (+)
hmgcl hmgcl,LOC107583590,LOC107721118,LOC107670875,LOC107715992 coding downstream 144896 8552448 ~ 8566788 (+)
trmt61b NA coding downstream 215849 8623401 ~ 8634193 (+)
greb1 greb1,LOC107719472,LOC107697724,LOC107590942 coding downstream 1358614 9766166 ~ 9819445 (+)
G78792 NA non-coding upstream 50674 8356084 ~ 8356486 (+)
G78786 NA non-coding upstream 74726 8282940 ~ 8332434 (+)
G78760 NA non-coding upstream 410353 7994627 ~ 7996807 (+)
G78753 NA non-coding upstream 420437 7984581 ~ 7986723 (+)
G78728 NA non-coding upstream 648960 7751414 ~ 7758200 (+)
G78797 NA non-coding downstream 55872 8463424 ~ 8485261 (+)
G78806 NA non-coding downstream 68958 8476510 ~ 8510824 (+)
G78808 NA non-coding downstream 70454 8478006 ~ 8479587 (+)
G78810 NA non-coding downstream 104845 8512397 ~ 8512647 (+)
LOC111193184 NA non-coding downstream 128880 8536432 ~ 8538381 (+)
fam167b LOC108433301,LOC101067225 other upstream 678159 7656307 ~ 7729001 (+)
G78671 LOC107659230,LOC107583602 other upstream 799496 7594707 ~ 7607664 (+)
LOC103024862 LOC108430185 other upstream 1534755 6857354 ~ 6872405 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other upstream 2877105 5452115 ~ 5530055 (+)
G78111 pole2 other upstream 4108976 4289507 ~ 4298184 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 122302 8529854 ~ 8549968 (+)
G78818 NA other downstream 128364 8535916 ~ 8537682 (+)
spata17 NA other downstream 1087897 9495449 ~ 9554725 (+)
LOC103029457 LOC108441045 other downstream 1475454 9883006 ~ 9955038 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other downstream 2130527 10538079 ~ 10556868 (+)

Expression


Co-expression Network