G78806


Basic Information

Item Value
gene id G78806
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 8476510 ~ 8510824 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106221
tttaattttaccatatttttcgcactataagacacacttaaaatcctttaatttccccaaaaatcttcagtgcgccttttaatttGGTGCTCCTTAAGTATGAatgttaccagtcaggttgttaggagcagtaaagccactccactGAAGTACAGCTTTAttcaagagtttcagtttagtttagggtggagcagtattagaattacccgctaaccgtgctaatcttttgccgttcagaggtgagtattatcagactatagtctgcatgtttaccgtgtaaaacaagctacgtgggatgaaacGCTACCTAATATCGCCCTGacttaccaaaacactcagggtttctcagtgtagctctgttgggtggcatttatTGTGGCTAGCGCTTgcgattagccgctaatgctaatgctaatgataatgatgctacatccagccttagtggaaatgtggaaatctaagtttactgtaaataaactgaagcgttttacttacccaaataaacagttttcaggagagaaatctgtgtagattaacatctagtgcTCCTTTGACTTTAAGGGTGCTTTcccacctgcctcgtttggtccgaaccaaagaagcaggtgtgaaaggagCCGTGAACCAcagtccggaccaaaggaccagattttggtcccaCCAACAGAGGTGGTTTCAGTCCGGATCTTCTGATccatggtccggttcgcctgcagtgtgaaagcgcttttctgaatggttcgaactttcggaccaattacaggaagctgagcaggtgttcctcaacaacggcagcagaaaaagaaaaataaccaactactactgactgcagcctgcgggaaggcggagttagacgtccagcgcgtccagtcccgcccactttgtccacgccacgccttgtcagtctcgcaagcttgtacattgtttacttccgttcagaggcggaaCTGGACGGCATGACGCTAACAAAGTGGGCTGCAGTCAGAaccggaaaaaacggaaaagcaggaaaaatgAGCATGTTCGTTTAAcgaatttgaactaacctagagtactgtgcctgaagctgctgctgctgctggtataaaaaccacaatagcagcaccactatggagacgaaattaatctgttcattccttttatccttatcctggaaaggTTTCCCGCCGAATTAACCCATCTATATAAGGCTgcagataaataataaatctttaacccagttcatttcttttttatgtacAACAACTTCAAAACTCCCAAACAAAAGTTGTGCCAACCTTATTACATATTGtgttcaaataataaaaaaaactttatatttcTAGTTGCCGTAATTGAAAATGGACAAACATGGTCCATTACTGTGGACAGCTGCAACTGCCACTGTTTCGTTGCCATATGGTCACAGTATGAATGTACTGAAAGACACTGAAAGAATGTTTAAGTcaaaaaatattgttgtttctaaaataaagctctgaaaaacaataagagacaaCCTAAAAAAAGACGTAAAAAGTTGGGAGGACAAGCCCAGTAGGAAAAATGATGCTGTCAGGAGTAAATGTGAAAAGTTGCAGACTAAAACAGCATCAGCCAAATTAATAACAGGTATTtgtttatgtaatatataaatgtgaaaaaataattaaatccaaCATCAGGTGAAACCCCTGGGAGAGTTTTAAAACTCAACATCACTAAagctcaacacgcttggaggagaacaataATTATTTGTTCGGTTACCTCAGCTAAACATGCCTGAAATCTGTTAGTTAAAGTAACTGAATGAGTAGTTATTGTTGAGCTTCAGTAAGTTGCATTAGCATCAATTTTAAAACATGCTAGCCCTCACCCTCTCAACAATCGCCTTACTACAGGATGGGAATTGGATATGACTAAACACAAGCTAAAATTAAGgatagaagtaaaaaaaaaaaagtaggaatTTGTAAGTATACAAATtgtttggttgattggttgatggCTAACCttgtttagctttaacttaaGATAATATAGATGTCTGGGCTGAACTACTGCATTTATTCTGTTGGAGAAACTGTGACCTTCAGCTTGAGTTAAACAGATGTGGCCTTTTATTTCAGAACTGGTCTGATATTTATGAGTCTTGGGTTTAGGATTTGCTACTCTCTGTTTATACTGTGTGTATAGTTTTAATCTAGTGATCTCCACACTGTAGAAGAGAGTGTGTAGAAGGAACATGTGGACAGCGCACACCAAGCATTTACGAGGAACTGAGGGaggaacattttctttaaaaattacTACCACCTAGACTAGTACAGTGTGTGCGAAAAGAAAGTGCCAATAATTACACACCAAAGTAAAAagttgtttattaattaatacagaAAGGTTGCTGTAAAGGGTTTTTACTGTGATGACTGTAGATGATTTCCAAGCTCAATATTGTGCCAAAGTTCAAtagtaataaaattaataaaca

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU106221 True 2473 lncRNA 0.39 4 8476510 8510824

Neighbor

gene id symbol gene type direction distance location
erich1 NA coding upstream 33955 8415207 ~ 8442555 (+)
ppie ppie coding upstream 667560 7802220 ~ 7808950 (+)
LOC103024072 pabpc4,LOC107654874,LOC107716002 coding upstream 677251 7766569 ~ 7799259 (+)
LOC103024901 NA coding upstream 711833 7759849 ~ 7764677 (+)
lck lck,LOC107716006,LOC107654872,LOC107721256,LOC108270195 coding upstream 732048 7682841 ~ 7744462 (+)
hmgcl hmgcl,LOC107583590,LOC107721118,LOC107670875,LOC107715992 coding downstream 41624 8552448 ~ 8566788 (+)
trmt61b NA coding downstream 112577 8623401 ~ 8634193 (+)
greb1 greb1,LOC107719472,LOC107697724,LOC107590942 coding downstream 1255342 9766166 ~ 9819445 (+)
LOC103026171 LOC108413038 coding downstream 1731764 10242588 ~ 10252495 (+)
LOC103026492 NA coding downstream 1771841 10282665 ~ 10292293 (+)
G78794 NA non-coding upstream 68958 8407160 ~ 8407552 (+)
G78792 NA non-coding upstream 120024 8356084 ~ 8356486 (+)
G78786 NA non-coding upstream 144076 8282940 ~ 8332434 (+)
G78760 NA non-coding upstream 479703 7994627 ~ 7996807 (+)
G78753 NA non-coding upstream 489787 7984581 ~ 7986723 (+)
G78810 NA non-coding downstream 1573 8512397 ~ 8512647 (+)
LOC111193184 NA non-coding downstream 25608 8536432 ~ 8538381 (+)
G78824 NA non-coding downstream 81921 8592745 ~ 8593288 (+)
G78834 NA non-coding downstream 138971 8649795 ~ 8672419 (+)
G79035 NA non-coding downstream 781734 9292558 ~ 9293030 (+)
fam167b LOC108433301,LOC101067225 other upstream 747509 7656307 ~ 7729001 (+)
G78671 LOC107659230,LOC107583602 other upstream 868846 7594707 ~ 7607664 (+)
LOC103024862 LOC108430185 other upstream 1604105 6857354 ~ 6872405 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other upstream 2946455 5452115 ~ 5530055 (+)
G78111 pole2 other upstream 4178326 4289507 ~ 4298184 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 19030 8529854 ~ 8549968 (+)
G78818 NA other downstream 25092 8535916 ~ 8537682 (+)
spata17 NA other downstream 984625 9495449 ~ 9554725 (+)
LOC103029457 LOC108441045 other downstream 1372182 9883006 ~ 9955038 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other downstream 2027255 10538079 ~ 10556868 (+)

Expression


Co-expression Network