G78808


Basic Information

Item Value
gene id G78808
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 8478006 ~ 8479587 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106223
ATATCAGTCCCATTTATAATTCATACCCTACCCCTAACCTCTCTGCTGTCCCAAGAGCCtcacccctctatcccaacaagaattagaacaccctacccctctatcccaacaagaatcagcacaccctacccctctatcccaacaagaatcagaacaccctacccctctatcccaacaagaattagaacaccctacccctctatcccaacaagaatcagaacaccctacccctctatcccaacaagaatcagaacaccctacccctctatcccaacaagaatcagaacatcctacccctctatctcaacaagaatcagaacatcctacccctctatcccaacaagaatcagaacaccctacccctctatcccaacaagaatcagaccaccctacccctctatcccaacaagaatcagaacactctATCCCGACAAGAATCAGaccaccctacccctctatcccaacaagaatcagaacactctATCCCGACAAGAATCAGaccaccctacccctctatcccaacaagaatcagaacaccctacccctctatcccaacaagaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106223 True 562 lncRNA 0.48 2 8478006 8479587

Neighbor

gene id symbol gene type direction distance location
erich1 NA coding upstream 35451 8415207 ~ 8442555 (+)
ppie ppie coding upstream 669056 7802220 ~ 7808950 (+)
LOC103024072 pabpc4,LOC107654874,LOC107716002 coding upstream 678747 7766569 ~ 7799259 (+)
LOC103024901 NA coding upstream 713329 7759849 ~ 7764677 (+)
lck lck,LOC107716006,LOC107654872,LOC107721256,LOC108270195 coding upstream 733544 7682841 ~ 7744462 (+)
hmgcl hmgcl,LOC107583590,LOC107721118,LOC107670875,LOC107715992 coding downstream 72861 8552448 ~ 8566788 (+)
trmt61b NA coding downstream 143814 8623401 ~ 8634193 (+)
greb1 greb1,LOC107719472,LOC107697724,LOC107590942 coding downstream 1286579 9766166 ~ 9819445 (+)
LOC103026171 LOC108413038 coding downstream 1763001 10242588 ~ 10252495 (+)
LOC103026492 NA coding downstream 1803078 10282665 ~ 10292293 (+)
G78794 NA non-coding upstream 70454 8407160 ~ 8407552 (+)
G78792 NA non-coding upstream 121520 8356084 ~ 8356486 (+)
G78786 NA non-coding upstream 145572 8282940 ~ 8332434 (+)
G78760 NA non-coding upstream 481199 7994627 ~ 7996807 (+)
G78753 NA non-coding upstream 491283 7984581 ~ 7986723 (+)
G78810 NA non-coding downstream 32810 8512397 ~ 8512647 (+)
LOC111193184 NA non-coding downstream 56845 8536432 ~ 8538381 (+)
G78824 NA non-coding downstream 113158 8592745 ~ 8593288 (+)
G78834 NA non-coding downstream 170208 8649795 ~ 8672419 (+)
G79035 NA non-coding downstream 812971 9292558 ~ 9293030 (+)
fam167b LOC108433301,LOC101067225 other upstream 749005 7656307 ~ 7729001 (+)
G78671 LOC107659230,LOC107583602 other upstream 870342 7594707 ~ 7607664 (+)
LOC103024862 LOC108430185 other upstream 1605601 6857354 ~ 6872405 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other upstream 2947951 5452115 ~ 5530055 (+)
G78111 pole2 other upstream 4179822 4289507 ~ 4298184 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 50267 8529854 ~ 8549968 (+)
G78818 NA other downstream 56329 8535916 ~ 8537682 (+)
spata17 NA other downstream 1015862 9495449 ~ 9554725 (+)
LOC103029457 LOC108441045 other downstream 1403419 9883006 ~ 9955038 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other downstream 2058492 10538079 ~ 10556868 (+)

Expression


Co-expression Network