G78810


Basic Information

Item Value
gene id G78810
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 8512397 ~ 8512647 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106225
TCACTCACCTGTACAGAGATGTGAGGGTCATCCCCAGGGAGGAAATGGTCACTGTCCTTCTTCTTCCAGCCCACATTTGGTAAAGGGTAGGCCATCACTTCACACCCAAATACGATGTCATGGCCAGTATAGTTTTTCGAGTTTTTGGGGTCTCTGATTATGCGAGGAGCTATGAGGAGAAAACATCTACATTTACTGGCCACTTgattagaaacccctactttGTGCttgcactcactggccactataAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106225 True 251 lncRNA 0.46 1 8512397 8512647

Neighbor

gene id symbol gene type direction distance location
LOC103031442 LOC103359616 coding upstream 5236 8469601 ~ 8507161 (+)
erich1 NA coding upstream 69842 8415207 ~ 8442555 (+)
ppie ppie coding upstream 703447 7802220 ~ 7808950 (+)
LOC103024072 pabpc4,LOC107654874,LOC107716002 coding upstream 713138 7766569 ~ 7799259 (+)
LOC103024901 NA coding upstream 747720 7759849 ~ 7764677 (+)
hmgcl hmgcl,LOC107583590,LOC107721118,LOC107670875,LOC107715992 coding downstream 39801 8552448 ~ 8566788 (+)
trmt61b NA coding downstream 110754 8623401 ~ 8634193 (+)
greb1 greb1,LOC107719472,LOC107697724,LOC107590942 coding downstream 1253519 9766166 ~ 9819445 (+)
LOC103026171 LOC108413038 coding downstream 1729941 10242588 ~ 10252495 (+)
LOC103026492 NA coding downstream 1770018 10282665 ~ 10292293 (+)
G78806 NA non-coding upstream 1573 8476510 ~ 8510824 (+)
G78797 NA non-coding upstream 27136 8463424 ~ 8485261 (+)
G78808 NA non-coding upstream 32810 8478006 ~ 8479587 (+)
G78794 NA non-coding upstream 104845 8407160 ~ 8407552 (+)
G78792 NA non-coding upstream 155911 8356084 ~ 8356486 (+)
LOC111193184 NA non-coding downstream 23785 8536432 ~ 8538381 (+)
G78824 NA non-coding downstream 80098 8592745 ~ 8593288 (+)
G78834 NA non-coding downstream 137148 8649795 ~ 8672419 (+)
G79035 NA non-coding downstream 779911 9292558 ~ 9293030 (+)
G79041 NA non-coding downstream 861009 9373656 ~ 9373883 (+)
fam167b LOC108433301,LOC101067225 other upstream 783396 7656307 ~ 7729001 (+)
G78671 LOC107659230,LOC107583602 other upstream 904733 7594707 ~ 7607664 (+)
LOC103024862 LOC108430185 other upstream 1639992 6857354 ~ 6872405 (+)
LOC103025550 qkia,LOC108413473,LOC107721620,LOC107590898,LOC107697705,LOC103376478,LOC108269894 other upstream 2982342 5452115 ~ 5530055 (+)
G78111 pole2 other upstream 4214213 4289507 ~ 4298184 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other downstream 17207 8529854 ~ 8549968 (+)
G78818 NA other downstream 23269 8535916 ~ 8537682 (+)
spata17 NA other downstream 982802 9495449 ~ 9554725 (+)
LOC103029457 LOC108441045 other downstream 1370359 9883006 ~ 9955038 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other downstream 2025432 10538079 ~ 10556868 (+)

Expression


Co-expression Network