G78824


Basic Information

Item Value
gene id G78824
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 8592745 ~ 8593288 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106252
tcgtccaactccccctccctctgtcgtccaactccccctccctctgtcgtccaactccccctccctcagtcgtccaactccccctccctcagtcgtccaaaccCCCTCGCCGCTGCTGCAGCTCTCGCACccctggcgcggcaccaacttcgcctcagcgcctcgtttctctcgtctctctcgttTCCCTCTTCCCCTCAGTCGTTCAAACCCCCTCTCTCAGTCATCCTCCTTCTCCATTTCTGCGTTCCTCCTGCTGTTCTCcaacagtgttgccaacttgccaacttagtttttgtttgttattgagagtttaaatgaacacacatgctcttcagtTCACAGCGCAGTCTCAGTcagaccacacactcacaccgctCTTCAAACACGCTGCAACGAACTGCGCATACCTAAAGCCGCCGctgactgtcaaaaaaaaaaaaaaaaacttaatcatGTAATTTACGTTAAAATGGAGTTATTTTCAGAAGTCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106252 True 496 lncRNA 0.52 2 8592745 8593288

Neighbor

gene id symbol gene type direction distance location
hmgcl hmgcl,LOC107583590,LOC107721118,LOC107670875,LOC107715992 coding upstream 25957 8552448 ~ 8566788 (+)
LOC103031442 LOC103359616 coding upstream 85584 8469601 ~ 8507161 (+)
erich1 NA coding upstream 150190 8415207 ~ 8442555 (+)
ppie ppie coding upstream 783795 7802220 ~ 7808950 (+)
LOC103024072 pabpc4,LOC107654874,LOC107716002 coding upstream 793486 7766569 ~ 7799259 (+)
trmt61b NA coding downstream 30113 8623401 ~ 8634193 (+)
greb1 greb1,LOC107719472,LOC107697724,LOC107590942 coding downstream 1172878 9766166 ~ 9819445 (+)
LOC103026171 LOC108413038 coding downstream 1649300 10242588 ~ 10252495 (+)
LOC103026492 NA coding downstream 1689377 10282665 ~ 10292293 (+)
LOC103026974 NA coding downstream 1735680 10328968 ~ 10336716 (+)
LOC111193184 NA non-coding upstream 54364 8536432 ~ 8538381 (+)
G78810 NA non-coding upstream 80098 8512397 ~ 8512647 (+)
G78806 NA non-coding upstream 81921 8476510 ~ 8510824 (+)
G78797 NA non-coding upstream 107484 8463424 ~ 8485261 (+)
G78808 NA non-coding upstream 113158 8478006 ~ 8479587 (+)
G78834 NA non-coding downstream 56507 8649795 ~ 8672419 (+)
G79035 NA non-coding downstream 699270 9292558 ~ 9293030 (+)
G79041 NA non-coding downstream 780368 9373656 ~ 9373883 (+)
G79042 NA non-coding downstream 780796 9374084 ~ 9375551 (+)
G79061 NA non-coding downstream 965765 9559053 ~ 9559269 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other upstream 42777 8529854 ~ 8549968 (+)
G78818 NA other upstream 55063 8535916 ~ 8537682 (+)
fam167b LOC108433301,LOC101067225 other upstream 863744 7656307 ~ 7729001 (+)
G78671 LOC107659230,LOC107583602 other upstream 985081 7594707 ~ 7607664 (+)
LOC103024862 LOC108430185 other upstream 1720340 6857354 ~ 6872405 (+)
spata17 NA other downstream 902161 9495449 ~ 9554725 (+)
LOC103029457 LOC108441045 other downstream 1289718 9883006 ~ 9955038 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other downstream 1944791 10538079 ~ 10556868 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other downstream 2208069 10801357 ~ 10814914 (+)
G79654 NA other downstream 2961394 11554682 ~ 11555139 (+)

Expression


Co-expression Network