G79042


Basic Information

Item Value
gene id G79042
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 9374084 ~ 9375551 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106546
CGCGTACTTCTACCATCGAAGAATCAGGTTTGTTTCTAACCCACCTCCTAAGCTCTCTCTTAAGTGCAGGGTCCCGAACTCCCTCGACAAACTGATCTCTCAATACTACCTTCATATTTGGTACTGCATCAGGTGTTTGTCTCAATACATTGTTAAGTGCTTGTGATAAGGCATGTGAAAATTCCAGTaagccttcactctctctctgtttgcggcTGTAAAAGTCATGCAATAGCTGAGCCCCACTACGCCTATCACTAAAAGCTTCCCGAAGGTAGGTGAACAGGTCACTAACCTGGTCTACTTCACTATCACTTCGTAAACGTACCTCTTCTAATGCAGCCCCTCGCAACAAAGAGAGAACAAAGTCATACTGCTCAGGAGGAGACTGACTGCGTTCAGTTTCCTCAATTAAATCATCTACCAGTCTTCCATCTTTTTCAAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106546 True 447 lncRNA 0.44 2 9374084 9375551

Neighbor

gene id symbol gene type direction distance location
trmt61b NA coding upstream 739891 8623401 ~ 8634193 (+)
hmgcl hmgcl,LOC107583590,LOC107721118,LOC107670875,LOC107715992 coding upstream 807296 8552448 ~ 8566788 (+)
LOC103031442 LOC103359616 coding upstream 866923 8469601 ~ 8507161 (+)
erich1 NA coding upstream 931529 8415207 ~ 8442555 (+)
ppie ppie coding upstream 1565134 7802220 ~ 7808950 (+)
greb1 greb1,LOC107719472,LOC107697724,LOC107590942 coding downstream 390615 9766166 ~ 9819445 (+)
LOC103026171 LOC108413038 coding downstream 867037 10242588 ~ 10252495 (+)
LOC103026492 NA coding downstream 907114 10282665 ~ 10292293 (+)
LOC103026974 NA coding downstream 953417 10328968 ~ 10336716 (+)
LOC103027561 NA coding downstream 976863 10352414 ~ 10362045 (+)
G79041 NA non-coding upstream 201 9373656 ~ 9373883 (+)
G79035 NA non-coding upstream 81054 9292558 ~ 9293030 (+)
G78834 NA non-coding upstream 701665 8649795 ~ 8672419 (+)
G78824 NA non-coding upstream 780796 8592745 ~ 8593288 (+)
LOC111193184 NA non-coding upstream 835703 8536432 ~ 8538381 (+)
G79061 NA non-coding downstream 183502 9559053 ~ 9559269 (+)
G79065 NA non-coding downstream 235184 9610735 ~ 9611764 (+)
G79084 NA non-coding downstream 311944 9687495 ~ 9687721 (+)
G79097 NA non-coding downstream 337661 9713212 ~ 9716264 (+)
G79115 NA non-coding downstream 448518 9824069 ~ 9831085 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other upstream 824116 8529854 ~ 8549968 (+)
G78818 NA other upstream 836402 8535916 ~ 8537682 (+)
fam167b LOC108433301,LOC101067225 other upstream 1645083 7656307 ~ 7729001 (+)
G78671 LOC107659230,LOC107583602 other upstream 1766420 7594707 ~ 7607664 (+)
LOC103024862 LOC108430185 other upstream 2501679 6857354 ~ 6872405 (+)
spata17 NA other downstream 119898 9495449 ~ 9554725 (+)
LOC103029457 LOC108441045 other downstream 507455 9883006 ~ 9955038 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other downstream 1162528 10538079 ~ 10556868 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other downstream 1425806 10801357 ~ 10814914 (+)
G79654 NA other downstream 2179131 11554682 ~ 11555139 (+)

Expression


Co-expression Network