LOC103029457 (LOC108441045)


Basic Information

Item Value
gene id LOC103029457
gene name LOC108441045
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 9883006 ~ 9955038 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106632
AATTTGCTGGAACTTGCTGAGTCTTTTCtgtagaggatttttttttttttttcatttttgcttagaaaataaacaggattttttttattgtaattttaaccACAGTTAACTATTTACTATTGGCACACTGTTAGATCCGACGTCCAAGCTGTGACAAaactaaaagataaaatattttagacaACCAATATGTATTGCTTTTAATTAACATAAATGcaaggataaaaaaaatggaaatttaaGAAAAATTGAAATTTTGAAGAATTCAGTATGTGTGAATTCAGAACTGTGAGGTGAATAAGTGAATGAGTTATAATTGTTAAGtggtaaatgtaatgtatttattgcactGAATCTAGAACATGGGTTTGGTATATGATTATGCAGCATTGTGAAAATCCAGAAACCACCTTTATTTACTGAATTTCCAGTTAATCCATTCTTCCATTCTTTGTAGAAGACTGTAGCAGTTCTGGCAGCACAGGTGCTCTGAACCCACACAAGGAGGCATCTTGTGGATTTCTTCTTTAGTACTCTACAGGAAAAGAATCTGATTCCTGTGCATATGGCTCTACTACAAAATGTtcaaaagaaactagaaaaaagtaaaatggtAGTGCTAGTGGATCTAAATAATGTGCTCAGACACTGCAGCTCGAAAATCTGCACTGCAcgtctgaaaataaagaaaagtatgaAAGATAGCAGAGATAGCAGAGCTAAGCAGAGAAACATCTGAACGGCACAGAAGCAGAAAGCAGAGCTCTTAGGAACTTAGAACACATCTTTTTCCAGAGCCTGGGAATCTGTCACCTGAAGCTTCTGTCCAGtttgtaattaataattaaatgtctTAATTACAGACAACAATAAAGACATACATTAATGTATATGCACTGAATTAGTTGAATATATGTCTGCAGAGATTCTGCTTTCTAACATTAAAAAAgggaataaaatgtttttagttgttAAGTTAGTGATAAAAAGTATATTGATTTTATCATATTGATATAGAAAACCACTAAAACCATTTCACTGTGAAAGACTGATGAAAGTGTAGATGATGCTTTTTCTTAACTCTTTACTGAAGGGCAGAGATTAGAAATGATTACTTGCTTATTTACTGCCTACATAAAcctttatgattatgattatatatttatgacTGTTATGCTTAATCATCACAGGATGATTAAGCATACCCTTCTGGGGTAAACTGACACAGCTGAGTGTAAATATATGATAATGAGTTGAGtgaatgtttatttatgtttgagtgacTAAGTGTTGATGAATGTAATAAGTGTTAATGAGCAAGTGTTGATGAGTGTTAATAAGTGTTTAAGTAATTAAGTgttaatgagtgagtgagtaatgtAGTGTCAATGAGTGTTAATGAATTTTTATGGGTGTTAATGGATGTTGAGTTACTGAGTGTTTAAGCAATTAAGTGTTGATTTTTAATGGATGTTAATGAGTGTTTATGGGTGCTAATGAATGTTTAGATAATTGAGTGTCGATGAATGTTAATGAGTGTTAGAGGGTTTAAGTGTTTGAGTGAGTAATTGAGTATTTGAGCGTTTATGGGTGTTAATTGATGTTTGAGTAATTGAGTGTTGATGAGTGTTTAAGAGTATTTgagtattttattcatattaaccAGTACTGGGTTTATCTTAAGCGTTAAATTCAGTTAATTCAAGATATAATTTCACCGTACTGTTTCTCATTTCACCCACACTGTGTTTGTGACTTGTGTTTATAACCTTTCTGCTTGTCTTTAACTTTTGGTGAAATTCTGATATTCTTTCTGTGAAAGATCTCATTGCCTAAGTTGTGGATGTTTCAGGTTAGTTTGATaagatgtaataaaaaaaatgtaaaaaaaaaaaaaaaaataataatcttgcTCTAATATTTATCTAAATTGGTGCATATCTCATTTCTCAAAATTACTCTGAATTACTGTTTATATCAGAGAAACAAATGACTGAATTCC
>XM_007240767.3
GTATATAGAGCAGTGCTGGGTTCAGCAGTAGAGCACATTAAGACAAATTACCCTTATTACACTAGAGATATTACCTCAACACCAAAGGCCTGGATTACAGAAAGGAGCTGCAGCCAACAGACGATGGAATCATGGAATCAGAGGAAGATCAAGACGGATTTACTGAGGAACTCGGGGCCTGTGAGACAAATGAGACGAGTTGGACCTGGAGTCAGACCATGAACTACGTAGGGCAGCTGGCAGGGCAGGTGTTCGTGCAGGTGAAGGAGCTGTACAGAGGCCTGAACCCCGCCACCCTGTCCGGCTGTATCGATGTCATTGTGGTGCGTCAGCCCGACGGCTCCTTGCAGTGTTCGCCCTTCCACGTTCGCTTTGGGAAGATGGGGGTGCTGCGCTCCCGGGAAAAAGTGGTTGACATAGAGATTAATGGAGAGCCCGTCAGCCTGCACATGAAACTGGGAGAGAATGGAGAGGCCTTCTTTGTGAAGGAGACAGAGAGTGATATGGAGATGGTACCACCCTACCTTGCAACATCCCCCATAATTACAGACGGCTCAGCTTTGATGGAATCACAGCTAGGAAACAGCACACCTCGTCTGACTGAGCCTATAACCGTGACCTCCATCCAGTCCCTGGGCCCTGCGCAGGCCTCTGGAGACAACAGTATAACaaagaagaggagaaagagaaggaggaagTCAAGAGTGGACAATATGAAGCGAGAGGACAATGGGGACTCTGAGGATGAGGACATTTTCCCCATTGATATGAGTTCAGATGAGGAGAAAGAAATCGTAGTAAGCAGAGCTACGTCACGTGAACCCTACAGTGAGCAGGCCAGGGGCGGTCCCTCCTGCAGCCCTTTAGCACAGCGGATGGTGTACTCCTCTTGTGAGGAGGATTGGAGACATAAGCAGAGgaCAAGGATGGACCAGACCAGTACTCTGCTTATACCAGCTAGTGCAGGGCTGTCCATCTCCTGCCCCCAAGAAGCATCAGCTTTTCCATCAACAATGAGCTCAGGAAATGACTCCTTGCCTCCGTCACCCAAGAGCGACTCAGAGCTACTGGTCAAACAGACAAGTATGGGGAAGCCCGAGAACCCTGAGATGCTGTGGGCCTGGGGAGAGTTGCCTCATGCTGCCaagCCTCTGATGAAGCAGCCTGTAACTGAGCCCGTGGTGGTCACTTCAGCACCGATCCCTATGCTGGACAGCACACACTTCCGGGCCATCACTGGAGATGGGATGGTGGAGCCCCTGGGTGAGAGTCCTCCAGTACTCAGCCTGTATGTGCCCGAGCTCAGGCCTGGAGAGGCTGCAGCTGCCCCAGAACCTGCTGCTTCTGTGGAGGAGGAAGCCATTGGAGCAGCTGCTCGTCTCATTACTGGCCCGGAGATTGAACCACACAGCGCTGGGACCCGAGACCTAAACAAGACAGACTCCCCATCAAAGCGAAAAGACAAAAGAAGTCGTCACCTTGGGTCAGATGGTGTGTACCTGGATGATCTAACAGAGCTGGAGCCTGAGGTGGCAGCACTCTACTTTCCCAAGAGTGATGGCATAAGCTCAGTTAGGGGTGGCACAGAGCCGAGGAGTGCCAATCAGTCACCTCAGTCCGTGGGCAGCAGTGGCATGGACAGCGGGGTGGACACCTTTTCCGAACATTTAGGAGACCTGCCTAATATTGCCATCTCGCTTTGTGGAGGTCTAACAGAGAACCAGGAGATCAGCAGAGAGGAATTCCAAGAGAGAGCAATATCTTATCAGGATTTTGTTGATAACCCGGCTATTATTGATGACCCCAACCTCGTCGTAAAGATCGGAACAAAGTACTACAACTGGAGTACAGCAGCTCCGCTTATGCTGGCTATGCAGGTGTTCCAGAAGCCCCTGCCAAAGGCTGCGGTGGAGAACATAATGAAGGAGAAGATGCCTAAGAAGGGAGGGCGCTGGTGGTTCTCGTAGGGGAGAAACAGCAGCTCTAAGTCGGAATCTGCAGCAGATCAGGTGGAGAGTGATGAGCAGCTACTGAGAGCCAGCAGGTTGAAGGATGAATCTTCCTCGAGTGATGAGGACAACAGAACTGCCGAGCAGACCCCACCCTGTGCTCAGAAGCAGCACCCCCACAGCCCTGCCAGCATCTGCTACAGAAAGACACTACGCTTATCTTCAGAACAACTTGCCAGTCTGCAGCTAAAAGAGGGTCCTAACGATGTGGTCTTTAGCGTCACCACTCAGTACCAGGGAACCTGCCGCTGTGAAGGCACCATATATTTGTGGAAATGGGACGATAAACTAGTAATTTCAGATATAGATGGCACCATCACCAGATCAGACACACTTGGGCATATTCTACCAACACTGGGCAAAGACTGGACCCATCAAGGCATTGCCCGCCTCTACCACAAAGTCAGCCAGAATGGCTATAAGTTCATGTATTGCTCAGCACGGGCGATTGGTATGGCTGGCATGACCAGAGGTTACCTACACTGGGTAAATGAGAGAGGCACCATGCTCCCTCAGGGTCCTGTTCTCCTCAGTCCTAGCAGCTTGTTTTCTGCATTACACAGGGAGGTCATTGAGAAAAAGCCAGAAAAGTTTAAAATTGAGTGTTTGACTGACATCAAGAACCTCTTCCATCCAAACATAGAGCCTTTCTATGCTGCTTTCGGAAACAGAGCAACAGATGTGTATTCATATAAGGAGGTGGGAGTACCCTTAAACCGAATCTTCACTGTGAACCCTAAAGGAGAGCTGATTCAGGAACACGCCAAGACCAACATATCATCGTACGGGCGTCTGTGTGAAGTGGTTGACCAtgtcttccctctgctgctcaGGGGCAATACCTCCGACTTCCCCTGCTGTGACACGTACAGCCAGTTCACCTACTGGAGAGAGCAGCTGCCGGAGCTGGACAAGCCAGAGCAGACTGTGGAGAACAGCTGAGGGAATGAATCCTGAAACCTGCGGGCTCCTCTTACCGTCTGTAGCACTACATTGCCACGTGCTCTTTTGCGAGCAGATAACATCATCAACACGTCATTTTCCTGCAGTATCACTTCACCCATTACAGTGCAGCTGCACTCTGAATGTTTATAATAGTTTAGAATACATGGTCATACATGTGTTTCTGTGATAGCAGGTGAATGATTTCAGTTTTAATTAAATCTGATCTCCGTTCAGCACTAAAACTGCATTGTCGTTTGACTGAAAGGCTATATTATCACTCACATGCAGAAATAGCTGAACTTCATAGTAAACGCTTATTGCTCTgagatttacatttttaagagaTATTTTATTACAGAGAAAGGTGTGAAACCAGCAGTACTTTTTAAAGTCTAACTCTATTTATAAGATGTAATTTAATCACAATCCAAATCCTTATTTCCTTCTGTGACTTTTTGCACATGCTAAGAACAGTCACGATACAAACGCAAAAACATATTTCATCAGCAGTGTAGCATATGGTTTCACAAATTTGTTTTACTCATgcaacatatatacatatttaatcttGCAGAAGTGACTCAGGATCAAATGGATTATCCTTTTCATATGTTGCTTTACTgaagtaaaaatgtaacaaattcTCTACCGTAAACAAACTAAAAGtttctgcatttttatgtattttttttcattatttgctgaataataacaaaaaatgtactATACCTAATTAGTTAAATTAAGCAAGTATAACAATGCATTTAAATTTGCTGGAACTTGCTGAGTCTTTTCtgtagaggatttttttttttttttcatttttgcttagaaaataaacaggattttttttattgtaattttaaccACAGTTAACTATTTACTATTGGCACACTGTTAGATCCGACGTCCAAGCTGTGACAAaactaaaagataaaatattttagacaACCAATATGTATTGCTTTTAATTAACATAAATGcaaggataaaaaaaatggaaatttaaGAAAAATTGAAATTTTGAAGAATTCAGTATGTGTGAATTCAGAACTGTGAGGTGAATAAGTGAATGAGTTATAATTGTTAAGtggtaaatgtaatgtatttattgcactGAATCTAGAACATGGGTTTGGTATATGATTATGCAGCATTGTGAAAATCCAGAAACCACCTTTATTTACTGAATTTCCAGTTAATCCATTCTTCCATTCTTTGTAGAAGACTGTAGCAGTTCTGGCAGCACAGGTGCTCTGAACCCACACAAGGAGGCATCTTGTGGATTTCTTCTTTAGTACTCTACAGGAAAAGAATCTGATTCCTGTGCATATGGCTCTACTACAAAATGTtcaaaagaaactagaaaaaagtaaaatggtAGTGCTAGTGGATCTAAATAATGTGCTCAGACACTGCAGCTCGAAAATCTGCACTGCAcgtctgaaaataaagaaaagtatgaAAGATAGCAGAGATAGCAGAGCTAAGCAGAGAAACATCTGAACGGCACAGAAGCAGAAAGCAGAGCTCTTAGGAACTTAGAACACATCTTTTTCCAGAGCCTGGGAATCTGTCACCTGAAGCTTCTGTCCAGtttgtaattaataattaaatgtctTAATTACAGACAACAATAAAGACATACATTAATGTA

Function

NR:

description
PREDICTED: phosphatidate phosphatase LPIN1-like isoform X1

GO: NA

KEGG:

id description
K15728 LPIN; phosphatidate phosphatase LPIN

RNA

RNA id representative length rna type GC content exon number start site end site
TU106632 False 2002 lncRNA 0.31 2 9939117 9955038
XM_007240767.3 True 4611 mRNA 0.45 22 9883006 9940006

Neighbor

gene id symbol gene type direction distance location
greb1 greb1,LOC107719472,LOC107697724,LOC107590942 coding upstream 63561 9766166 ~ 9819445 (+)
trmt61b NA coding upstream 1248813 8623401 ~ 8634193 (+)
hmgcl hmgcl,LOC107583590,LOC107721118,LOC107670875,LOC107715992 coding upstream 1316218 8552448 ~ 8566788 (+)
LOC103031442 LOC103359616 coding upstream 1375845 8469601 ~ 8507161 (+)
erich1 NA coding upstream 1440451 8415207 ~ 8442555 (+)
LOC103026171 LOC108413038 coding downstream 287550 10242588 ~ 10252495 (+)
LOC103026492 NA coding downstream 327627 10282665 ~ 10292293 (+)
LOC103026974 NA coding downstream 373930 10328968 ~ 10336716 (+)
LOC103027561 NA coding downstream 397376 10352414 ~ 10362045 (+)
LOC111193128 NA coding downstream 709420 10664458 ~ 10666674 (+)
G79123 NA non-coding upstream 10287 9870600 ~ 9872719 (+)
LOC111193137 NA non-coding upstream 14748 9866192 ~ 9868258 (+)
G79115 NA non-coding upstream 51921 9824069 ~ 9831085 (+)
G79097 NA non-coding upstream 166742 9713212 ~ 9716264 (+)
G79084 NA non-coding upstream 195285 9687495 ~ 9687721 (+)
G79141 LOC108441044,LOC108269989,LOC107594821 non-coding downstream 1852 9956890 ~ 9958311 (+)
G79166 NA non-coding downstream 99683 10054721 ~ 10056138 (+)
G79165 LOC103027354 non-coding downstream 101429 10056467 ~ 10058746 (+)
G79174 NA non-coding downstream 152592 10107630 ~ 10113321 (+)
G79183 NA non-coding downstream 175981 10131019 ~ 10131317 (+)
spata17 NA other upstream 328281 9495449 ~ 9554725 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other upstream 1333038 8529854 ~ 8549968 (+)
G78818 NA other upstream 1345324 8535916 ~ 8537682 (+)
fam167b LOC108433301,LOC101067225 other upstream 2154005 7656307 ~ 7729001 (+)
G78671 LOC107659230,LOC107583602 other upstream 2275342 7594707 ~ 7607664 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other downstream 583041 10538079 ~ 10556868 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other downstream 846319 10801357 ~ 10814914 (+)
G79654 NA other downstream 1599644 11554682 ~ 11555139 (+)
G79717 NA other downstream 1946057 11901095 ~ 11905385 (+)
G79761 LOC108438749 other downstream 2109806 12064844 ~ 12076211 (+)

Expression


Co-expression Network