LOC111193137


Basic Information

Item Value
gene id LOC111193137
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 9866192 ~ 9868258 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106646
GTGGTGCTGTTTCTCCCAGAAAACGCACCATCAAATTCCTGAAACTagcaacagaaaaataaataaggtggcttgaaaataaaaaaagtgctgaaaaataaaaaagagtgcaaactaaatgctaaagctaacacGCACAGGATTATGGGATCGTGAGTTCGGAAACCCACAGGAAACATGTCCAGCGGGAGAAATCACTGTTATTGGGATTTTACTGCTCGTAATGTcctctttgtttgtgtgtttggagcACCAGCTTACAAGGAAGACTTTTACTCCCATCTCTCAAAAACTCATCCCTCTGTACTATCCATCCATAGTCCAGAGCCTACAGGTGATGCTGCTGATTGGCTAGACTGATGCAGGGGGATGACTCTTTCTCGTTCCACGCTCCCTGGCCAGCCAGTCAGAGAAATGGAGACGTTTGGCATATTTGCTGTTAATTAGTTGctcttttataatgtttatctttatattatatatatatatata
>XR_002650280.1
TCTCCCAGAAAACGCACCATCAAATTCCTGAAACTagcaacagaaaaataaataaggtggcttgaaaataaaaaaagtgctgaaaaataaaaaagagtgcaaactaaatgctaaagctaacacGCACAGGATTATGGGATCGTGAGTTCGGAAACCCACAGGAAACATGTCCAGCGGGAGAAATCACTGTTATTGGGATTTTACTGCTCGTAATGTcctctttgtttgtgtgtttggagcACCAGCTTACAAGGAAGACTTTTACTCCCATCTCTCAAAAACTCATCCCTCTGTACTATCCATCCATAGTCCAGAGCCTACAGGTGATGCTGCTGATTGGCTAGACTGATGCAGGGGGATGACTCTTTCTCGTTCCACGCTCCCTGGCCAGCCAGTCAGAGAAATGGAGACGTTTGGCATATTTGCTGTTAATTAGTTGctcttttataatgtttatctttatattatatatatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106646 True 492 lncRNA 0.40 3 9866192 9868258
XR_002650280.1 False 476 lncRNA 0.41 3 9866203 9868253

Neighbor

gene id symbol gene type direction distance location
greb1 greb1,LOC107719472,LOC107697724,LOC107590942 coding upstream 46747 9766166 ~ 9819445 (+)
trmt61b NA coding upstream 1231999 8623401 ~ 8634193 (+)
hmgcl hmgcl,LOC107583590,LOC107721118,LOC107670875,LOC107715992 coding upstream 1299404 8552448 ~ 8566788 (+)
LOC103031442 LOC103359616 coding upstream 1359031 8469601 ~ 8507161 (+)
erich1 NA coding upstream 1423637 8415207 ~ 8442555 (+)
LOC103026171 LOC108413038 coding downstream 374330 10242588 ~ 10252495 (+)
LOC103026492 NA coding downstream 414407 10282665 ~ 10292293 (+)
LOC103026974 NA coding downstream 460710 10328968 ~ 10336716 (+)
LOC103027561 NA coding downstream 484156 10352414 ~ 10362045 (+)
LOC111193128 NA coding downstream 796200 10664458 ~ 10666674 (+)
G79115 NA non-coding upstream 35107 9824069 ~ 9831085 (+)
G79097 NA non-coding upstream 149928 9713212 ~ 9716264 (+)
G79084 NA non-coding upstream 178471 9687495 ~ 9687721 (+)
G79065 NA non-coding upstream 254428 9610735 ~ 9611764 (+)
G79061 NA non-coding upstream 306923 9559053 ~ 9559269 (+)
G79123 NA non-coding downstream 2342 9870600 ~ 9872719 (+)
G79139 LOC108441044,LOC105911203,LOC107594821,LOC107674076,LOC107719497 non-coding downstream 81331 9949589 ~ 9955787 (+)
G79141 LOC108441044,LOC108269989,LOC107594821 non-coding downstream 88632 9956890 ~ 9958311 (+)
G79166 NA non-coding downstream 186463 10054721 ~ 10056138 (+)
G79165 LOC103027354 non-coding downstream 188209 10056467 ~ 10058746 (+)
spata17 NA other upstream 311467 9495449 ~ 9554725 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other upstream 1316224 8529854 ~ 8549968 (+)
G78818 NA other upstream 1328510 8535916 ~ 8537682 (+)
fam167b LOC108433301,LOC101067225 other upstream 2137191 7656307 ~ 7729001 (+)
G78671 LOC107659230,LOC107583602 other upstream 2258528 7594707 ~ 7607664 (+)
LOC103029457 LOC108441045 other downstream 14748 9883006 ~ 9955038 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other downstream 669821 10538079 ~ 10556868 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other downstream 933099 10801357 ~ 10814914 (+)
G79654 NA other downstream 1686424 11554682 ~ 11555139 (+)
G79717 NA other downstream 2032837 11901095 ~ 11905385 (+)

Expression


Co-expression Network