G79141 (LOC108441044,LOC108269989,LOC107594821)


Basic Information

Item Value
gene id G79141
gene name LOC108441044,LOC108269989,LOC107594821
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 9956890 ~ 9958311 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106668
ATTTGTATATCCTGTACTGGGTGCTGGACTTTGGGCTGAAGAGCTTGTCTGCGCCAGAGGAGGTAAACTGTTTGACAGCCTGGGTGAAGAGCAGGAAGTCGGTGAAGAGGAAAGCGTAGAGCTCCTTGTTGCTTTTGGTTTTGAAAAGTTTCCCACTGTGCAGGAGTTTTCGAGGACCCAGGCAGTTGGTCAGAGAGTTAAATACCAGGCTTTCTGTGATCCCCTCACACTGGACATGATTCTGGATCCACTCCAGGCGATCTGAATTCTCCTTTTCTCGCACTCCCTCGTTCACCTGAGAGCACAGCTCCTCCGCCTTCTCCAGAGCCTCTCGCAACTGAGAATGATCCACATGACTATCGGGTGTACTCTCAAGGATCTGgcaatatacacacaaacatttactTATTACGATGTGCTCAG

Function

NR:

description
PREDICTED: intersectin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106668 True 423 lncRNA 0.49 2 9956890 9958311

Neighbor

gene id symbol gene type direction distance location
greb1 greb1,LOC107719472,LOC107697724,LOC107590942 coding upstream 137445 9766166 ~ 9819445 (+)
trmt61b NA coding upstream 1322697 8623401 ~ 8634193 (+)
hmgcl hmgcl,LOC107583590,LOC107721118,LOC107670875,LOC107715992 coding upstream 1390102 8552448 ~ 8566788 (+)
LOC103031442 LOC103359616 coding upstream 1449729 8469601 ~ 8507161 (+)
erich1 NA coding upstream 1514335 8415207 ~ 8442555 (+)
LOC103026171 LOC108413038 coding downstream 284277 10242588 ~ 10252495 (+)
LOC103026492 NA coding downstream 324354 10282665 ~ 10292293 (+)
LOC103026974 NA coding downstream 370657 10328968 ~ 10336716 (+)
LOC103027561 NA coding downstream 394103 10352414 ~ 10362045 (+)
LOC111193128 NA coding downstream 706147 10664458 ~ 10666674 (+)
G79139 LOC108441044,LOC105911203,LOC107594821,LOC107674076,LOC107719497 non-coding upstream 1103 9949589 ~ 9955787 (+)
G79123 NA non-coding upstream 84171 9870600 ~ 9872719 (+)
LOC111193137 NA non-coding upstream 88632 9866192 ~ 9868258 (+)
G79115 NA non-coding upstream 125805 9824069 ~ 9831085 (+)
G79097 NA non-coding upstream 240626 9713212 ~ 9716264 (+)
G79166 NA non-coding downstream 96410 10054721 ~ 10056138 (+)
G79165 LOC103027354 non-coding downstream 98156 10056467 ~ 10058746 (+)
G79174 NA non-coding downstream 149319 10107630 ~ 10113321 (+)
G79183 NA non-coding downstream 172708 10131019 ~ 10131317 (+)
G79193 NA non-coding downstream 202417 10160728 ~ 10165644 (+)
LOC103029457 LOC108441045 other upstream 1852 9883006 ~ 9955038 (+)
spata17 NA other upstream 402165 9495449 ~ 9554725 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other upstream 1406922 8529854 ~ 8549968 (+)
G78818 NA other upstream 1419208 8535916 ~ 8537682 (+)
fam167b LOC108433301,LOC101067225 other upstream 2227889 7656307 ~ 7729001 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other downstream 579768 10538079 ~ 10556868 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other downstream 843046 10801357 ~ 10814914 (+)
G79654 NA other downstream 1596371 11554682 ~ 11555139 (+)
G79717 NA other downstream 1942784 11901095 ~ 11905385 (+)
G79761 LOC108438749 other downstream 2106533 12064844 ~ 12076211 (+)

Expression


Co-expression Network