G79165 (LOC103027354)


Basic Information

Item Value
gene id G79165
gene name LOC103027354
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10056467 ~ 10058746 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106694
atttttttatttaagtatcaAGATGTCCTTTACAAGAAGTACTGCTTGCCAAGATATCATTTACTGTGTATTGTATAACTAGTTTGTGCAGCACCACAGGTGTCAGGCTgatattaatatgttttaaagtttgaccTCATGTTTTAGACTACCTGTAAATTCACACACTGCATTATTTCACAGCAGCATTAACTACGAGCCTGCTGCCCAAAACTAGTGGACTCCTGCCCTCTACTGGCATAGAAAAATCAATACAAGAACAACAAACATCACATTTTAGCTTTGGAAGACGATAAATATTCCTGAGTTTAAATCCGGAGGTTTGTTGGCAGTTAAATTCACATCCACAAAGTATAAAACACTTTCAGTCAGCTTCTGCGACTGAATTACACTAAATTACACTGCAggctaaaatacatttatcttaCAAATATACTTgatgtaattaaaaataatattaaatacaaccCTATAAAATCCTACCTATCTTACTAATAGATATGGCTGTATAAAAAAGTGATGGCTTCCTAGTGTATTAAACTTATTTGGAGTCTCACCAGGGGGAGCTGTCAATACAACATTTAGTTGAAGTAATCTTTCACTCTAGCCCACAGTTCTTGTACATCAGGCTAGTCAGTTGATAGCATCCCTCCCTCTTCACTAAACTATCCTGGGTAGCTCCTTTACCTCAGCATGCATCTGTCTCAGCACTAGCAGTAGCAATGTGCTAATGTGCTAATACGCTAAAGGAAATCTAGACAAAAAGTCTAGAAGTGATTCAAGTAGTTCAATCTAAACCCTACTGTATCCTCTCACTAAACGGTTTAGAGGTTTAGGACTAAACTATGACATCATTTCATCGCAAACTATGACATCATTTTAAAAGCTAACACCTAAAGAAACGTGGACTCCAGAGGTTCATGCTCAATCTTCTAAtattctctaacaaaccacaaTTGAGCTTCAGGACTAAATCATTCCTAATGTCTTATGGTTAGAGTATTTAACTGAAGATCTCATTATTGAAACCTCTAACCTCAAAACTAAAGCCAAAACAAATTCAAGTCTAAGAGAGAATAGTATTTAAGTTTAACTAATTAAACATTGAACTTTTGAAATTAAAAGCTAAGAAATGGGGACAATTATCCTCAATCTGATGTTTGTGCTCAgttgtcagtgttttatatcTGCAAGTTCAACCTTAAACCAGAGTATTTCATTAACTCTTTCAGGATTTACACATGGAATTCAAACTCTAATGCAAAAGGAAACATGAACATATCCTTAGACAGGGGTTCCTGTCTAATCATCACATCCtcagaaactcatcatttctaaAATTCAATCCTGACATCAAagatttttctgaatatttaagGATTGAAACGGGATTCTGAACTGCAAACTCTAAGAGATAACATGGTAAGTTCTGTGTTAATTTTCACTTCATGGCACTTCAGAGTCCAGACTCAGTTCAGGTTCAAAACAATGTCCAGTCTTATCATCCCACTGGAAATTGGAATATGTTGAAATCGGTGGTCAATATAAtcctaaatgcaaaaaaaaatatttctgaaaatatttcattatattatattttcctaTGGAATATTTAGAGCTGCCTCACACATTTAGGGGAGATGATAACCGTATGATCAGCTCCTTCTGGCTCAGCTTTTCAGCAGGTCTCCCAGATCGTAGGTATCAAAAAAGTCTGAAACTCCCTCTCCGTCATCCAGACCCCAGAGGTAGTCATCGTGGTCAATAGGGGGAGAGAAACTGACAAAGGACTGGTCAGGGGTAAAGGATGTGCTGGGCAGCTGATCTTCAGTGATCTGGAGTAGGCTTGGGGGAAGACCCAGAATTTTCTCCACGTCCAGCAGGGCAGCTCCGTTATTGCTGCTGTCCATCGGGGGCTGGGGTTTAGGGGGTATGGCTTCAGGGGCGTGCAGGGGTTTGGGGGTGTATGGGTGATGTGGGGTGTTGGTTTGAGTTGGGTGAGTGACCCCGTTGCTGAAGTCCCTCCTGGTTGCCTTCACCGGACTCACGTCCTCCAGACCCTCCTCTGGACACAGGTAAACTTCAATAGCCCCATTCCTGCTCTTCAGGTAGATCTGCATATTGCCCTGC

Function

NR:

description
transcription factor E2F2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106694 True 2130 lncRNA 0.39 2 10056467 10058746

Neighbor

gene id symbol gene type direction distance location
greb1 greb1,LOC107719472,LOC107697724,LOC107590942 coding upstream 237022 9766166 ~ 9819445 (+)
trmt61b NA coding upstream 1422274 8623401 ~ 8634193 (+)
hmgcl hmgcl,LOC107583590,LOC107721118,LOC107670875,LOC107715992 coding upstream 1489679 8552448 ~ 8566788 (+)
LOC103031442 LOC103359616 coding upstream 1549306 8469601 ~ 8507161 (+)
erich1 NA coding upstream 1613912 8415207 ~ 8442555 (+)
LOC103026171 LOC108413038 coding downstream 183842 10242588 ~ 10252495 (+)
LOC103026492 NA coding downstream 223919 10282665 ~ 10292293 (+)
LOC103026974 NA coding downstream 270222 10328968 ~ 10336716 (+)
LOC103027561 NA coding downstream 293668 10352414 ~ 10362045 (+)
LOC111193128 NA coding downstream 605712 10664458 ~ 10666674 (+)
G79166 NA non-coding upstream 329 10054721 ~ 10056138 (+)
G79141 LOC108441044,LOC108269989,LOC107594821 non-coding upstream 98156 9956890 ~ 9958311 (+)
G79139 LOC108441044,LOC105911203,LOC107594821,LOC107674076,LOC107719497 non-coding upstream 100680 9949589 ~ 9955787 (+)
G79123 NA non-coding upstream 183748 9870600 ~ 9872719 (+)
LOC111193137 NA non-coding upstream 188209 9866192 ~ 9868258 (+)
G79174 NA non-coding downstream 48884 10107630 ~ 10113321 (+)
G79183 NA non-coding downstream 72273 10131019 ~ 10131317 (+)
G79193 NA non-coding downstream 101982 10160728 ~ 10165644 (+)
G79179 NA non-coding downstream 130994 10189740 ~ 10192215 (+)
G79341 NA non-coding downstream 286770 10345516 ~ 10348155 (+)
LOC103029457 LOC108441045 other upstream 101429 9883006 ~ 9955038 (+)
spata17 NA other upstream 501742 9495449 ~ 9554725 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other upstream 1506499 8529854 ~ 8549968 (+)
G78818 NA other upstream 1518785 8535916 ~ 8537682 (+)
fam167b LOC108433301,LOC101067225 other upstream 2327466 7656307 ~ 7729001 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other downstream 479333 10538079 ~ 10556868 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other downstream 742611 10801357 ~ 10814914 (+)
G79654 NA other downstream 1495936 11554682 ~ 11555139 (+)
G79717 NA other downstream 1842349 11901095 ~ 11905385 (+)
G79761 LOC108438749 other downstream 2006098 12064844 ~ 12076211 (+)

Expression


Co-expression Network