G48251


Basic Information

Item Value
gene id G48251
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 12497354 ~ 12500200 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU54872
GATGGAACCATAATACAGTGTTCAAATGTTGTATACCATAGTAAAGATGGAAAATCATGTTTATATATTATAGCATTTAGTATTATTTATGTCTTGTCTCATGAATTTAATTTCGTATAACTTTCATATGGTTTGATGCAGCACATAAATCATATCTGTCAGTAACTATTTGTCAGTGGCAAAACAAACAAATGTCTTTCTGTTAAAATAGATGCAATATTATCACAGACAGTATATAGGAATGCATTATTCATGTAAACATATCATCATTGTGGAGCTTATTTTAAGATAAGCCTGCCCAAACAGAAAAACAAGACAGAAAATAACTGTATAACAGTGTGCTATGAGACACCTCCATTCCTCCTTTTCCTCCAGATCACTAGGAGAGCCATGTAACAGACGGTGGCAGTGAGGAGGATGGTTAGGAGAATCAACAAACAGATCCATGCCGCAGGACACAAGCCCTTTCTGATCCCGGTAGGTTCCTCTGGAAGAAGGCTGCTCACACTGAGTATATAACCCAGAGCCCAGCCCACAGAGGCCTCACCTGCCTTTTTCTGGAAAGCAACATTTTGGAAAGAATGTTCATCAAAGCTATAACCCCTAAGCATTAGCACTTGTATATACACTGCAACTGCACAATAATCCTTCAGGTATTTTTTCAAGTGGGGGGATTTCCTGGTCATCTCTTCTATGGTCATATTGCACATAGCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54872 True 716 lncRNA 0.47 3 12497354 12500200

Neighbor

gene id symbol gene type direction distance location
CI01000006_12447621_12461167 NA coding upstream 36163 12447621 ~ 12461191 (+)
CI01000006_12345828_12346634 NA coding upstream 150434 12345828 ~ 12346920 (+)
CI01000006_12315343_12316143 RFESD coding upstream 181123 12315299 ~ 12316231 (+)
CI01000006_12307031_12307314 NA coding upstream 190035 12307031 ~ 12307319 (+)
CI01000006_12298229_12304430 UB2R2, CDC34, UBE2R2, UBE2R2.S, CDC34A, CDC34B coding upstream 192751 12297797 ~ 12304603 (+)
CI01000006_12592270_12606447 NA coding downstream 91638 12591838 ~ 12607314 (+)
CI01000006_12608120_12620040 NA coding downstream 107920 12608120 ~ 12620111 (+)
CI01000006_12684154_12695960 DNAJC21 coding downstream 183361 12683561 ~ 12696396 (+)
CI01000006_12764729_12782405 NA coding downstream 263716 12763916 ~ 12783368 (+)
CI01000006_12808989_12841786 NEDD4L coding downstream 308789 12808989 ~ 12842198 (+)
G48101 NA non-coding upstream 147783 12308142 ~ 12349571 (+)
G48086 NA non-coding upstream 236010 12259495 ~ 12261344 (+)
G48214 NA non-coding upstream 269100 12228047 ~ 12228254 (+)
G48119 NA non-coding upstream 339648 12143871 ~ 12157706 (+)
G48113 NA non-coding upstream 379334 12103183 ~ 12118020 (+)
G48122 NA non-coding downstream 19146 12519346 ~ 12532674 (+)
G48270 NA non-coding downstream 77295 12577495 ~ 12577940 (+)
G48079 NA non-coding downstream 80125 12580325 ~ 12582476 (+)
G48278 NA non-coding downstream 179294 12679494 ~ 12679697 (+)
G48284 NA non-coding downstream 180637 12680837 ~ 12681068 (+)
G48081 NA other upstream 112527 12377006 ~ 12384827 (+)
G48094 NA other upstream 217813 12277620 ~ 12279541 (+)
G47318 NA other upstream 859102 11624267 ~ 11638252 (+)
G47159 NA other upstream 975651 11416229 ~ 11521703 (+)
G47145 NA other upstream 1985548 10485358 ~ 10511806 (+)

Expression


Co-expression Network