G79379 (LOC108430231,LOC107583545)


Basic Information

Item Value
gene id G79379
gene name LOC108430231,LOC107583545
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10452410 ~ 10468725 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106960
TTGATCTCTTCCTGCCGCTTTAGGAGTTCTGCATCTTTCTGAGCAATGGCCTCCTCAGCAACAGCGAGCAGCTCTCGCCTCCTCTCCGCCTCCCTCCTGCGCGCCTCCTGCACAGCctgcacctcctcctcctccagatTCTCCTGGGCTTTCTTCAGGCTCTTCTGCAGTGCAGACAGCTGTGCCTCCTTCTCCCTGAGAGCTGCCTCCTTCTGAGCCAGTTGTGCCTCTCTGGCGGACAGCTTATCGTCAGTTTCCTCTGCAAGATTTTTAGATTCTGGCTGTTTCACCAGGGGTTTGTTTTTGAGCTCAGCCTCCCTCTTGTTCAGTGCTTCCTCCTGAGCTAGAAGGGAGGCTTTTTTATCCTCCTCCTTCTCATGTTCTGCTTGGATATTCTTCACCTGTTCCTGTAGTTCAGATACAAGGCCATTCAGAGTCTCAACCTCAACCTGGAGGCCAGAGTTCTCTCTCTGAAGATTGTCACGAGTAGCTTTGTGCTCAGCCAGCTGTTGCTCCAGAGATTCTACTGCCTTCTCTCTGTGACTACATTCCTTATGTGTGGCCTGAAGTTTCTCCAGGTTTCTCTGTAAGGAGCTGAACTGTTCCGCCTCCTGCCTCAGCTGGGTCACTTGCTGCTCTAAAGTTCTAATAACTGtatttttctccacaatttcACGGCTCTGCTCATCCAGTCGGCACTTGGTCGCTTTTAGCTCCTCTTCTCCGGTGGAATCGGTCATCCTGGAACCACAGCTATTTTCCAAAGATGGCTTCAAGTGGCTGGAGCCGGCTTCCACAGCTCTGCACAGTTTGTTTTCAATGGCAAGATatttctgctgctgttcctgcATGCTCTTCTGAAGGACACTGAGCTCAGAAGCCAGACGTTCCTTCTCTTGCAGAACATCATCATGAGTTCTCTTCTCTTGTTGGAGTTGGGATTTCATCTCCTGGATACTGAACTCCAGATCGGTGATGCGCTGATCTTTCTTGTGGGACTCTAACTGGCAACTCTCCAGTTGACCTTTGACCTCTGCCACAGGTAAGTGGTTATCAGGATGTTCTGGGAGGGTAGAGTTATCCAGAGACCCTTTCTTTAGAGGGGGCTGTCCACGGAGCACCTCAGGCTCCTCCTCTTCCTGCCGCCGCTTTCTGGTTTCCGCCTTGGTTCGGCTCTCTGAGCACGTGCAGCTGTTCAGCTGGAGAAGGTCCTTGATTATagagctGTTTTTGGCAGCCTCCTCTACGGTTTGATCCAGAGCTGTCTGGACCTTGCTGATGGCATCATCCTTCTCCACGCACATTAACATCAGATCAGTCAACCTCTGCTCACGACTCTCCAGGGTCTTTTTTGTTTCCTCCAGTTCTTTGGACAAGTTGCACTGAGCACCCAATTCTTCAGTTTTAAGCGTCAGTTGTCTCTGCACTTCACTGAGCTGTTCTGTGAGTTTGGAGACCTTTTCCTCCAGACTGCTCTGAGTTGTCACTGACTGGCCGTCAGACGTCTCCAAACAGGACTGGGCAGCCTCAGCATCTCGTCTAATCCCTGCAAGGTCACAGGACATGGAATCCAGCATCCCATCCAGAGATGGAGGCTCGTCCACCTTGGAGTATTCTTCGCCATCACAATCAGCCTCTCCAGTAGATTTCCCCAccaattttttgaagatttcaATTCGTCGCTCACACCTCTCCTCAacaagctctctctctttggaaATGCGCTCaTTGTAGTCTGTCTGCATTTGGGAGAAGAGCTCTGAGAATTCTTTGGTGACTTCCGCTCGAATACGACATTCTAGTGTCTGGTTTTCTGCAATTGCTGTTCTCAGCTTTTCCTGGAGCTCTTCCAGCACCATCAGCTGATTCTCATATGCCTCTTTATCCAGTAGCACCGTCTCTTTCCCTTCCTCATCATCTGAGTCTTCCATGGTGTCCTCCATGACGCTCTCCGCTTCCTCCTCAGAGTCTGCATCCTCTTGGACGTCCTCCAGACTGTGCTCCCACCGCACCAGTGAACTGCGGCGCGCCCCTTGCTGACCTGCATTATTGATGATTAAGGAAACCTTCCGAGCGCTCTTCTTCACCACCAACGGCACACTGGTAGCAGTGGTGAGGACCACAACctTCTGTGCCACAGCGGAGAACTTAAGCACGTTGAGGGTCTCGTCGAACATGGACGCGCACTGGTTGATGTTCACGATCATGCAGGCTTTGCCTCGgccggtgaagtagccctgcaGGTAGTGTGTGAGCTTACTCTCCCGGAAAGGAACATGTTGCCTTTAAGCGCATTAATGCATTTGCCCAAGCTCAGCAGAGAGGTGTTGATGTTTCCCGCCTCCTTTAGGCGATCGCCTTTATTCTGAGTTTTGCCACATCTTTCGGATCCCGCCAGATCGCATAAGGACAGCTCGCTGACAGACTCCACTCTAGGTATGCCCAAATCCTCAATCCGCAGAATCCGGACAGAAAAGATACTGTGACTTCTGCTGGACAGTTGGttaagtctggtggaggagatacTCTGGTTTTTCTTTCCcagtttcattactttaaaggcCTCCTCGGCACTGTTCACCTGTACCCAGCGCAGATcttttataaaggagtttcctTTGATGTCCTGGCAGAGACGCAAGTTGGTCCTCCGTACCGcattgctgggtggttgctcgAGTAAATCATGTATGTTCTCATTATAGATCTCACAAAACGAGACCCACACAGAGAACTTGCTGTGGAGGTCCATATCCAGGCTGAATCTATTCTTACTCACTGTACCGTCCAATTCACCCAACTCTTGACCTTCAAACACCTTGGACGTCAGCAGGCTAGACATACTTTTT
>TU106961
ACCTTCAGTTTTAAGCGTCAGTTGTCTCTGCACTTCACTGAGCTGTTCTGTGAGTTTGGAGACCTTTTCCTCCAGACTGCTCTGAGTTGTCACTGACTGGCCGTCAGACGTCTCCAAACAGGACTGGGCAGCCTCAGCATCTCGTCTAATCCCTGCAAGGTCACAGGACATGGAATCCAGCATCCCATCCAGAGATGGAGGCTCGTCCACCTTGGAGTATTCTTCGCCATCACAATCAGCCTCTCCAGTAGATTTCCCCAccaattttttgaagatttcaATTCGTCGCTCACACCTCTCCTCAacaagctctctctctttggaaATGCGCTCaTTGTAGTCTGTCTGCATTTGGGAGAAGAGCTCTGAGAATTCTTTGGTGACTTCCGCTCGAATACGACATTCTAGTGTCTGGTTTTCTGCAATTGCTGTTCTCAGCTTTTCCTGGAGCTCTTCCAGCACCATCAGCTGATTCTCATATGCCTCTTTATCCAGTAGCACCGTCTCTTTCCCTTCCTCATCATCTGAGTCTTCCATGGTGTCCTCCATGACGCTCTCCGCTTCCTCCTCAGAGTCTGCATCCTCTTGGACGTCCTCCAGACTGTGCTCCCACCGCACCAGTGAACTGCGGCGCGCCCCTTGCTGACCTGCATTATTGATGATTAAGGAAACCTTCCGAGCGCTCTTCTTCACCACCAACGGCACACTGGTAGCAGTGGTGAGGACCACAACctTCTGTGCCACAGCGGAGAACTTAAGCACGTTGAGGGTCTCGTCGAACATGGACGCGCACTGGTTGATGTTCACGATCATGCAGGCTTTGCCTCGgccggtgaagtagccctgcaGGTAGTGTGTGAGCTTACTCTCCCGGAAAGGAACATGTTGCCTTTAAGCGCATTAATGCATTTGCCCAAGCTCAGCAGAGAGGTGTTGATGTTTCCCGCCTCCTTTAGGCGATCGCCTTTATTCTGAGTTTTGCCACATCTTTCGGATCCCGCCAGATCGCATAAGGACAGCTCGCTGACAGACTCCACTCTAGGTATGCCCAAATCCTCAATCCGCAGAATCCGGACAGAAAAGATACTGTGACTTCTGCTGGACAGTTGGttaagtctggtggaggagatacTCTGGTTTTTCTTTCCcagtttcattactttaaaggcCTCCTCGGCACTGTTCACCTGTACCCAGCGCAGATcttttataaaggagtttcctTTGATGTCCTGGCAGAGACGCAAGTTGGTCCTCCGTACCGcattgctgggtggttgctcgAGTAAATCATGTATGTTCTCATTATAGATCTCACAAAACGAGACCCACACAGAGAACTTGCTGTGGAGGTCCATATCCAGGCTGAATCTATTCTTACTCACTGTACCGTCCAATTCACCCAACTCTTGACCTTCAAACACCTTGGACGTCAGCAGGCTAGACATACTTTTT
>TU106962
GTGACAGACCAATATATTTGGCAAGACTACATTTAATATGCAtggaaatactttatatttcgCATTACTTCACTgaataaaaaagagctataaaCGTACAACAGTTGCTTAAAAATTGAACCCAGCTTTTCAGTTTCAGACTAAAACACCTGATACAtcctatacaacacacactggTCCCTGATATCTGTGCAATGTTACCCATGAgcataaaaagaagaaatctttatttacattcacttacatcagaaagtttaaaacagtttaaaatagtAAATGACATGCCGGAGTGGAGCTACTTCTTTACTGAAGACAGCCTTTTCCTGCTGTGCAAGTATCGCCGACCCTTCAGTCGATTCTCTTTCCCTGCCCCTCTCGTTGAGACAGAAGCTGGGAGGCGCGTTTCAGCGTGAGAGGCGGAAGTAGTACCTTTCTTTAGAGGGGGCTGTCCACGGAGCACCTCAGGCTCCTCCTCTTCCTGCCGCCGCTTTCTGGTTTCCGCCTTGGTTCGGCTCTCTGAGCACGTGCAGCTGTTCAGCTGGAGAAGGTCCTTGATTATagagctGTTTTTGGCAGCCTCCTCTACGGTTTGATCCAGAGCTGTCTGGACCTTGCTGATGGCATCATCCTTCTCCACGCACATTAACATCAGATCAGTCAACCTCTGCTCACGACTCTCCAGGGTCTTTTTTGTTTCCTCCAGTTCTTTGGACAAGTTGCACTGAGCACCCAATTCTTCAGTTTTAAGCGTCAGTTGTCTCTGCACTTCACTGAGCTGTTCTGTGAGTTTGGAGACCTTTTCCTCCAGACTGCTCTGAGTTGTCACTGACTGGCCGTCAGACGTCTCCAAACAGGACTGGGCAGCCTCAGCATCTCGTCTAATCCCTGCAAGGTCACAGGACATGGAATCCAGCATCCCATCCAGAGATGGAGGCTCGTCCACCTTGGAGTATTCTTCGCCATCACAATCAGCCTCTCCAGTAGATTTCCCCAccaattttttgaagatttcaATTCGTCGCTCACACCTCTCCTCAacaagctctctctctttggaaATGCGCTCaTTGTAGTCTGTCTGCATTTGGGAGAAGAGCTCTGAGAATTCTTTGGTGACTTCCGCTCGAATACGACATTCTAGTGTCTGGTTTTCTGCAATTGCTGTTCTCAGCTTTTCCTGGAGCTCTTCCAGCACCATCAGCTGATTCTCATATGCCTCTTTATCCAGTAGCACCGTCTCTTTCCCTTCCTCATCATCTGAGTCTTCCATGGTGTCCTCCATGACGCTCTCCGCTTCCTCCTCAGAGTCTGCATCCTCTTGGACGTCCTCCAGACTGTGCTCCCACCGCACCAGTGAACTGCGGCGCGCCCCTTGCTGACCTGCATTATTGATGATTAAGGAAACCTTCCGAGCGCTCTTCTTCACCACCAACGGCACACTGGTAGCAGTGGTGAGGACCACAACctTCTGTGCCACAGCGGAGAACTTAAGCACGTTGAGGGTCTCGTCGAACATGGACGCGCACTGGTTGATGTTCACGATCATGCAGGCTTTGCCTCGgccggtgaagtagccctgcaGGTAGTGTGTGAGCTTACTCTCCCGGAAAGGAACATGTTGCCTTTAAGCGCATTAATGCATTTGCCCAAGCTCAGCAGAGAGGTGTTGATGTTTCCCGCCTCCTTTAGGCGATCGCCTTTATTCTGAGTTTTGCCACATCTTTCGGATCCCGCCAGATCGCATAAGGACAGCTCGCTGACAGACTCCACTCTAGGTATGCCCAAATCCTCAATCCGCAGAATCCGGACAGAAAAGATACTGTGACTTCTGCTGGACAGTTGGttaagtctggtggaggagatacTCTGGTTTTTCTTTCCcagtttcattactttaaaggcCTCCTCGGCACTGTTCACCTGTACCCAGCGCAGATCtttataaaggagtttcctTTGATGTCCTGGCAGAGACGCAAGTTGGTCCTCCGTACCGcattgctgggtggttgctcgAGTAAATCATGTATGTTCTCATTATAGATCTCACAAAACGAGACCCACACAGAGAACTTGCTGTGGAGGTCCATATCCAGGCTGAATCTATTCTTACTCACTGTACCGTCCAATTCACCCAACTCTTGACCTTCAAACACCTTGGACGTCAGCAGGCTAGACATACTTTTT

Function

NR:

description
PREDICTED: kinesin-like protein KIF20B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106960 True 2849 lncRNA 0.51 14 10452410 10468725
TU106961 False 1455 lncRNA 0.50 9 10462485 10468725
TU106962 False 2187 lncRNA 0.48 12 10456306 10468725

Neighbor

gene id symbol gene type direction distance location
LOC103027561 NA coding upstream 90365 10352414 ~ 10362045 (+)
LOC103026974 NA coding upstream 115694 10328968 ~ 10336716 (+)
LOC103026492 NA coding upstream 160117 10282665 ~ 10292293 (+)
LOC103026171 LOC108413038 coding upstream 199915 10242588 ~ 10252495 (+)
greb1 greb1,LOC107719472,LOC107697724,LOC107590942 coding upstream 632965 9766166 ~ 9819445 (+)
LOC111193128 NA coding downstream 195733 10664458 ~ 10666674 (+)
LOC103024809 LOC107689792,LOC105902344 coding downstream 259123 10727848 ~ 10764714 (+)
LOC103032219 slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804 coding downstream 1108514 11577239 ~ 11637984 (+)
pex13 pex13 coding downstream 1341508 11810233 ~ 11823175 (+)
kiaa1841 kiaa1841 coding downstream 1417511 11886236 ~ 11962874 (+)
G79334 NA non-coding upstream 28528 10401494 ~ 10423882 (+)
G79345 NA non-coding upstream 60890 10388404 ~ 10391520 (+)
G79341 NA non-coding upstream 104255 10345516 ~ 10348155 (+)
G79179 NA non-coding upstream 260195 10189740 ~ 10192215 (+)
G79193 NA non-coding upstream 286766 10160728 ~ 10165644 (+)
G79381 NA non-coding downstream 8938 10477663 ~ 10558011 (+)
G79384 NA non-coding downstream 37612 10506337 ~ 10557504 (+)
G79395 NA non-coding downstream 161234 10629959 ~ 10635012 (+)
G79399 NA non-coding downstream 183130 10651855 ~ 10652324 (+)
G79412 NA non-coding downstream 273765 10742490 ~ 10744266 (+)
LOC103029457 LOC108441045 other upstream 497372 9883006 ~ 9955038 (+)
spata17 NA other upstream 897685 9495449 ~ 9554725 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other upstream 1902442 8529854 ~ 8549968 (+)
G78818 NA other upstream 1914728 8535916 ~ 8537682 (+)
fam167b LOC108433301,LOC101067225 other upstream 2723409 7656307 ~ 7729001 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other downstream 69354 10538079 ~ 10556868 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other downstream 332632 10801357 ~ 10814914 (+)
G79654 NA other downstream 1085957 11554682 ~ 11555139 (+)
G79717 NA other downstream 1432370 11901095 ~ 11905385 (+)
G79761 LOC108438749 other downstream 1596119 12064844 ~ 12076211 (+)

Expression


Co-expression Network