LOC103025860 (pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868)


Basic Information

Item Value
gene id LOC103025860
gene name pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10538079 ~ 10556868 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU106974
ATGTGACTGCGCTAGGGGCTCGAGGTCTCCGTCCACGGAATCCAGCGGCGCGAGGCCACGGCGCGTGTTTGGGGAATTGTTCTTCAGCAGAAAGATGCCTTTTGATTGGACGATCAGCTGCCTCCACGCGGAGGTGAGAGCAGCCCCACTGCGACAGTGGAATGCTAAGGGGCCCTAGTTTCAGACCTCTGAAATCTGTGGCCCTCTAGTGAAGATGGCGGCCCAGAGGAGACACCTGGTCAGGGACTTTAACCGGTACATTACCTGCTCCATGTGCCGCGGATACCTGATCAAACCCACCGCCGTCACAGAATGCCTGCACACGTGCTGGATAAGACCCTGGAAGAAATAATCTTTAAGCTTGTGCCTGGTCTTCGTGAGAGAGGAACAGCAAGAAATTGAATTCTGGAGGAAGAATAAATCCAGAGCGAATGGTGAAGAAGGCCCCAGACCCAAGAGGATTCGGCTCAGTGAAGAAGATGATGAGAAAGATGATGAGCAGGGTGGTGATTACCACAGGAGTGACCCCCAGATCGCCATATGCCTAGACTGCCTGCGAAACAACAGCCAGTCTGGAGAGAGTATagtaaaagtgtgtGGCCTGATGAAGAAGTTCATCCGTTGCTCCACCCGCGTCACTGTGGGCACCATTAAGAAGTTTCTCTGTGTTAAGCTGAAGTTGCCCAGTTCTTATGAGCTGGATGTTTTATGTAATGGGGAAATCATGGGGAAGGACCACACCCTGGAATTCATCTACCGAACCCGCTGGAGACTGCAGGGAGACAGTGTGTATCCCATGGTTCTGGAGTACAGGCCTCGCATAGACTTCGgctaaaacagaacaaaagcaCTTGGCCGTGCGAAGATGCTGTTTTTGAGTCCTGACCGAACTTGTGTGACGGACAAAACAAGTGGATGTGGCTCCTTAGAAATATCAGTAACCCAACTTGACCGACATGGCTGCACTTTGGTTCCAACTGACCTCGGcctggctccgccccctgcAGCAGCATGTACGGCTACTCCTGTAAGACTTTTGTTGCTTGCTGTCTTCATGACAACACATCCACGTGAGGTGAAACGTTTGGGAGTTTGCTGCCAAGGACAAACAGGGTTGTGATggacagaaaacaaaaagcacttaaaaatgcaCTTCAGTCGTGTGAAAGGAAAGACTACGAATACGGTTTTGTCTCATAGGGTCACGCGTACATAGGTTAAGTAGAGGAAGTGATGAGCTCACTGATTAGAGAACTGGGTAAAGGTTAGTGTTCGGTTTCTCAGTTTTGTTCCTCTTCTCTGCTGCCTGCTTTTCTTTTGGGTTTTCCGGCTCTGTTTCTCcctgctctttttttctctctctttctctgtttttttttatctctgtctgACGCACATGCATTCTTCCACACCACACTCacctttgttttctctctctttccctcggTGCGATTCCTATAATGGTGTTTTTGGCAGCCGCCTGAGATATTAATGGATCTTATTCAGATGGGTTTGAATGGAAGGCGGCAGAATTACATTACAGTCTTATCCAGTTGAAAAGAAGTCCCAGAACAATGGCAAAAGGTCAACATCTACAAAGGGCCTAACTCTTTCAATGATAACTTTTTTCAATGAAAACCAAAGCAGAATATTTCTTATTCAGATCTCTAGGTTTTAATCTAATCTATAGATTTGAACTATGCTGTTTATGTGAACATTTGAATGATCAGATAAGGGCAGAAATCTAATTATTGTCCATAagccaaaataaaaaaggccAAAAAGGATATACAGGGTTATATTAGAGCTTCGCAAGAAAGTGATGTTGTATATGGGTCCTTGTGTAGTGTGTACTTTGAAACGATACATTCTGATCTCAGATGCTTGCGGTAAAAAGTAGATGAGGCTTTAATACTAAGGGCAAAAAACGAGCCAAAAGACAAAAGAGAAAATCTGTGACAAaaatgtagttaaaaaaaaacagagaacacaATACAAACGGAGCAAAACAGCTAACCAAAAATCTAAGTCAAACACGAGGAAAAAAGATGTCAATACACGGAAATACAATCAGAAAGTGAATGCTCTGTAGATAAACAGTTTCGATACTTCatgtcaataaaaataataaaaaaacaaacaggttCATATACACGTACAGATTAGTCACAGCTGAAAACCATTCTAGAATTACGGAGATGAGGAGCATGAGAAAGTGCAGCGATTGGAGGCCAAACATTCAATGTTGTTAGAtgcatgctggggattgtagttctGGAGCGACACATGTCCATTGATGGGAAGGGGAAAGACAGAGTTAGGAACTACAGTGTCTGTATCAGGTGTTACATACTTATATAGGTGCCTTTAAAAGAAATTGTGTCAAACTGAATGGACCTTTAAGACGAGTCCAAACATAAAATCTTATTACCACAATCTaaattttaacaataaatacatcacaAAAGAGTTGTAGTAACATTTTGAAGAATAGAATACTTAAATTGTATTACCTTAACTTACCCAAACTTACTTGTATTTCCTTACCCAAACTTAAATTGTATTACCTGTATTCAGCAATAGAGGGAGCTCTTCACCCTGCAAACTGTGAACACGTAACCTaactaggctggaggcagaatgaggtagaggtccacagtgaacacacacacacaccaaactactgCTTAGCCTGCAAAGAATAAACGTATCCAAGCCAATAGAGCCAAGTGCTGAGAAAACATGAAGGATCTAGAATTCATTTAGgatcttaaattattatttttttgtatatttaacagTGTTCTAGAGTTCTAGAGATGTGAGGTTTTGTTACAACAGTGATGCCAGGCTGGTGAATTCAGGTACCAAACTTGAAGACATATCTTGCCCAGGCTTTATAGTTATGTGAATGATTTGAATATGTCTGTATAAAGTCTATATTGTGAACATAATCTGGCAAAATACTCATTTAATCTATGTGATCTAAACCAAAACAACAGGCTTTGCAAGACTTCCAGTTGGAAGGACAGTCTGTTCAGGACAGTTTGGAACATCATGACAGGGAGTTCTGTGTGTTCATATATTTTTGGCTTTATGAGGGTACGTTTAGAGATCTGCATCATCATGTgctgtaattaattaaatctcCTTGCTGCTGCAGTAGATTTCTGCATCTTATCTTAAGGTCTAGTTTAGATAATACTAAAGGACTGCCAACATCAGTTTGAGGAGCATTCCCAAAaagttagtgttagtgtttggTTTCATTAGACTGAGTGCTCTGTGACTGGAATAATGCCAGTCCTTCCTCACAGCATGTTAACTGTCTGTATGCCAGACTTCCCTGTTCCTACAGCTTTCCTCACTTTTCAGAAAGTAAAGTCAGTGTTGTTCACAGGCTTCAGAGCAGGGATGTAAGGTaatatgaaattaattaattagttaacatgtaaagattggtgtcagaagtggttcatttagtgttgtgattaaaccccacccactaaATTGTACTATGTCGTTAGACTTGGGTTCTAATTGGATGaaaagtaaacttttatttagattttataaatatgatattgGGTTTTTATACTATAGAGTTTTACTAAGGATAGCAATATATCGTAATATTGTTTAGAATATTgaaatatatcatgatatattgaATAGAGATGGAAAGAATGATTAGCTGTTTATTGGTATCTGCCTATGTTCAGCCAGAATATGCAATCAGCCACTATTTCTCAAATACCATTCCGTTCCGAGTTATCAGGGTTCCctcgggtccttaaaaagtcttaaattgtcttaaatttacactgtgtttaatgcCTGTGGGAAGTTAgatgctaatgcttctccagcagtgctagtcggggtaagcagcaggctgccgataatactcacctctgaatggtaaaagatctagcggttagcggctaatgctaatactgctccagcctcgggcTAAATTAAAACTCCTGTGTAATGCTGTACCTTACCTGActtgtaaaattcatacataagttgcaccggattaaaaggcgtactgatgattttgggggaaattaaaggattttaagtgcgctttatagtgcgaCAAATACggtaaatctaaaaataaacaatacaatcttggcacagagtggtccagcagtctaaagcgctgccgctatgagcgggaggtcacaggttTGAACCCCATGCCAACACTcaaagggagcaaaattggcctctctctccccacatcactaaagggtgatgtctgcagcacagagcgtatgtgagctgatgtatcaaaaccgagttgctgcgctttcctccgagggcgctggctactcggcaatgctgcatcagcagcagctcgaaaagaagcggtggctggcttcacatatattggaggaagcatgtgttagtcttcaccctcctggtgtgttggggcattactagcaacaggtggagtcctaatgagtgagttggatCATTGGCGGAGcagaattggggagaaaatggggtaaAATTAGTACTGCAACTTTTGTAAGGGCACCTGGTAGCTTACAACAGAAATAGAATTTAGGCTAGTTTCACACAGCAGGAACAAAGTCTGATCAGTTTTTTACCAATTCCAATATTTTTccaattataatttttaatatgaCTTATTTCCGACATTTATCTGAACAGTTTACCTTCCTAAACTGACGGTCATGCGCAAAACAGCAacgcttcacatgaagtttcagtttcatcttctccagaATCACAGGAGCTATTAAAGAGTTTCATAGAATGACAGCTGGCCTATCACCAGCAATACATTCCAGCTCCCTGTAAAAATGCCATGTTAATTCAGCTACACCCCCTTCAGACAGTGGTAGCAATACGTGCCTTTAAATTTAGCCACACTTACCCACGCTGCTATCCCACCACTAAAAACCTTACTCACTGTTCCCGTACATTTTCCCTTTTCCTCACAGCCTTAACCCCGCCCCCTTTGTGTGTTGAGCTGCCCAGTGCTGCATAAGGCTGTGTATggttcaatatattgcaatacagtATTACAAAAGAAAATTTGCTTTGGTGGCATTTTAATGTCTTTCTTCTGCCAGCACTGGAGCATTGTGTGATGGAGACATCATAGCTGGTGATTGGGATAAGGAATTGTATAATGTTcataccgtttttattagtggTGCAACTCTGTGATCACTCTGTAAAAAGTCCAGCTTTGCACAAATGCTGCCCAGGTAGACGTTGTCCTTTTCTGCCAATAGGTGTTTTGTTTGGGAAAGCAGATCCAGAATTAAATGCACCTGAATTgaacacaaatacagctctgaaaaaaataagagattaaaaaattgatgagtttctttgattttaccaaattgaaaacctctggaatataatcaagaagaaaataaatgattacaagtcatcaaactaagctgaacttcttgaatgtttgcaccaggagtgacataaagttattcaaaaacagtgtgtacgactggtggaggagaacatgccaagatgcacaaaaaattgtaaagaccagggttattccaccaaatatggatttctgaactcttaatactttatgaatatgaacttgttttctttgcattatttaagggtctgaaagctc
>XM_007238109.3
CGCTGGTTCCGTGTTCTCGGCTGGTCCTGCCCCGTCGCGCCGCCGCCCGCGAAAATGTGACTGCGCTAGGGGCTCGAGGTCTCCGTCCACGGAATCCAGCGGCGCGAGGCCACGGCGCGTGTTTGGGGAATTGTTCTTCAGCAGAAAGATGCCTTTTGATTGGACGATCAGCTGCCTCCACGCGGAGGTGAGAGCAGCCCCACTGCGACAGTGGAATGCTAAGGGGCCCTAGTTTCAGACCTCTGAAATCTGTGGCCCTCTAGTGAAGATGGCGGCCCAGAGGAGACACCTGGTCAGGGACTTTAACCGGTACATTACCTGCTCCATGTGCCGCGGATACCTGATCAAACCCACCGCCGTCACAGAATGCCTGCACACGTTCTGTAAGAGCTGTATTGTCCAGCATTTTGAGGAGAGTAATGAGTGTCCTGAATGTGGCATTCAGGTTCATGAAACGAACCCTCTGGAAATGCTGAGGCTGGATAAGACCCTGGAAGAAATAATCTTTAAGCTTGTGCCTGGTCTTCGTGAGAAGGAGGAACAGCAAGAAATTGAATTCTGGAGGAAGAATAAATCCAGAGCGAATGGTGAAGAAGGCCCCAGACCCAAGAGGATTCGGCTCAGTGAAGAAGATGATGAGAAAGATGATGAGCAGGGTGGTGATTACCACAGGAGTGACCCCCAGATCGCCATATGCCTAGACTGCCTGCGAAACAACAGCCAGTCTGGAGAGAGTATagtaaaagtgtgtGGCCTGATGAAGAAGTTCATCCGTTGCTCCACCCGCGTCACTGTGGGCACCATTAAGAAGTTTCTCTGTGTTAAGCTGAAGTTGCCCAGTTCTTATGAGCTGGATGTTTTATGTAATGGGGAAATCATGGGGAAGGACCACACCCTGGAATTCATCTACCGAACCCGCTGGAGACTGCAGGGAGACAGTGTGTATCCCATGGTTCTGGAGTACAGGCCTCGCATAGACTTCGgctaaaacagaacaaaagcaCTTGGCCGTGCGAAGATGCTGTTTTTGAGTCCTGACCGAACTTGTGTGACGGACAAAACAAGTGGATGTGGCTCCTTAGAAATATCAGTAACCCAACTTGACCGACATGGCTGCACTTTGGTTCCAACTGACCTCGGcctggctccgccccctgcAGCAGCATGTACGGCTACTCCTGTAAGACTTTTGTTGCTTGCTGTCTTCATGACAACACATCCACGTGAGGTGAAACGTTTGGGAGTTTGCTGCCAAGGACAAACAGGGTTGTGATggacagaaaacaaaaagcacttaaaaatgcaCTTCAGTCGTGTGAAAGGAAAGACTACGAATACGGTTTTGTCTCATAGGGTCACGCGTACATAGGTTAAGTAGAGGAAGTGATGAGCTCACTGATTAGAGAACTGGGTAAAGGTTAGTGTTCGGTTTCTCAGTTTTGTTCCTCTTCTCTGCTGCCTGCTTTTCTTTTGGGTTTTCCGGCTCTGTTTCTCcctgctctttttttctctctctttctctgtttttttttatctctgtctgACGCACATGCATTCTTCCACACCACACTCacctttgttttctctctctttccctcggTGCGATTCCTATAATGGTGTTTTTGGCAGCCGCCTGAGATATTAATGGATCTTATTCAGATGGGTTTGAATGGAAGGCGGCAGAATTACATTACAGTCTTATCCAGTTGAAAAGAAGTCCCAGAACAATGGCAAAAGGTCAACATCTACAAAGGGCCTAACTCTTTCAATGATAACTTTTTTCAATGAAAACCAAAGCAGAATATTTCTTATTCAGATCTCTAGGTTTTAATCTAATCTATAGATTTGAACTATGCTGTTTATGTGAACATTTGAATGATCAGATAAGGGCAGAAATCTAATTATTGTCCATAagccaaaataaaaaaggccAAAAAGGATATACAGGGTTATATTAGAGCTTCGCAAGAAAGTGATGTTGTATATGGGTCCTTGTGTAGTGTGTACTTTGAAACGATACATTCTGATCTCAGATGCTTGCGGTAAAAAGTAGATGAGGCTTTAATACTAAGGGCAAAAAACGAGCCAAAAGACAAAAGAGAAAATCTGTGACAAaaatgtagttaaaaaaaaacagagaacacaA

Function

symbol description
pcgf5b Predicted to enable metal ion binding activity. Predicted to be involved in histone H2A-K119 monoubiquitination and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of PRC1 complex. Is expressed in eye; gonad; and muscle. Orthologous to human PCGF5 (polycomb group ring finger 5).

NR:

description
polycomb group RING finger protein 5-B isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031519 PcG protein complex cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106974 True 5653 lncRNA 0.41 8 10538133 10556868
XM_007238109.3 False 2146 mRNA 0.46 9 10538079 10553208

Neighbor

gene id symbol gene type direction distance location
LOC103027561 NA coding upstream 176034 10352414 ~ 10362045 (+)
LOC103026974 NA coding upstream 201363 10328968 ~ 10336716 (+)
LOC103026492 NA coding upstream 245786 10282665 ~ 10292293 (+)
LOC103026171 LOC108413038 coding upstream 285584 10242588 ~ 10252495 (+)
greb1 greb1,LOC107719472,LOC107697724,LOC107590942 coding upstream 718634 9766166 ~ 9819445 (+)
LOC111193128 NA coding downstream 107590 10664458 ~ 10666674 (+)
LOC103024809 LOC107689792,LOC105902344 coding downstream 170980 10727848 ~ 10764714 (+)
LOC103032219 slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804 coding downstream 1020371 11577239 ~ 11637984 (+)
pex13 pex13 coding downstream 1253365 11810233 ~ 11823175 (+)
kiaa1841 kiaa1841 coding downstream 1329368 11886236 ~ 11962874 (+)
G79379 LOC108430231,LOC107583545 non-coding upstream 69354 10452410 ~ 10468725 (+)
G79334 NA non-coding upstream 114197 10401494 ~ 10423882 (+)
G79345 NA non-coding upstream 146559 10388404 ~ 10391520 (+)
G79341 NA non-coding upstream 189924 10345516 ~ 10348155 (+)
G79179 NA non-coding upstream 345864 10189740 ~ 10192215 (+)
G79395 NA non-coding downstream 73091 10629959 ~ 10635012 (+)
G79399 NA non-coding downstream 94987 10651855 ~ 10652324 (+)
G79412 NA non-coding downstream 185622 10742490 ~ 10744266 (+)
G79417 NA non-coding downstream 219831 10776699 ~ 10777628 (+)
G79423 NA non-coding downstream 233814 10790682 ~ 10792779 (+)
LOC103029457 LOC108441045 other upstream 583041 9883006 ~ 9955038 (+)
spata17 NA other upstream 983354 9495449 ~ 9554725 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other upstream 1988111 8529854 ~ 8549968 (+)
G78818 NA other upstream 2000397 8535916 ~ 8537682 (+)
fam167b LOC108433301,LOC101067225 other upstream 2809078 7656307 ~ 7729001 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other downstream 244489 10801357 ~ 10814914 (+)
G79654 NA other downstream 997814 11554682 ~ 11555139 (+)
G79717 NA other downstream 1344227 11901095 ~ 11905385 (+)
G79761 LOC108438749 other downstream 1507976 12064844 ~ 12076211 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other downstream 1666409 12223277 ~ 12279506 (+)

Expression


Co-expression Network