G79412


Basic Information

Item Value
gene id G79412
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10742490 ~ 10744266 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU107007
CTTCTCGTAGCCAGAGGTGCGACAGATGCACATAAATCTCAGCTCTATTTCTGCTGATCTCGTTAAGGAGACAGCGCTGCGTCCTGCAGCTTCATCCGGTCTTCTGAAGAGCTCTGGAGGAGGCTACGTTTGCTAATGCTGATTCAGCCTCCTATCTTCACTACCGGTACCTCGTTACATACTCTACTCTGCATATTACCCAGAAGACTCTTGAAATGGGCTTGTAAATTCTGTCTGCCAGACCAGTAACGATGGCCTGTAACTGTAAACTGCTACGTTGCCAGAACCAACCTCATGACAACTATTATCTaagaactccatttcccagcatgcccCAGACTCTTACTCCACATGTCAGGTGACTCTTCCCCAGTCTGCTCTGATTGCCTAATTGTTTCCACCTGtgttcccttgtatatatagcccttgttttgtcagtgtttgttGTGTATTGACCCTATTGTGCCTTGTTTCTCGTGATTTTCAGTTGTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107007 True 493 lncRNA 0.46 2 10742490 10744266

Neighbor

gene id symbol gene type direction distance location
LOC111193128 NA coding upstream 75816 10664458 ~ 10666674 (+)
LOC103027561 NA coding upstream 380445 10352414 ~ 10362045 (+)
LOC103026974 NA coding upstream 405774 10328968 ~ 10336716 (+)
LOC103026492 NA coding upstream 450197 10282665 ~ 10292293 (+)
LOC103026171 LOC108413038 coding upstream 489995 10242588 ~ 10252495 (+)
LOC103032219 slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804 coding downstream 832973 11577239 ~ 11637984 (+)
pex13 pex13 coding downstream 1065967 11810233 ~ 11823175 (+)
kiaa1841 kiaa1841 coding downstream 1141970 11886236 ~ 11962874 (+)
LOC103021592 xpo1b,LOC108438731,LOC108269901,LOC107715966,LOC107744605,LOC107583557 coding downstream 1258527 12002793 ~ 12040710 (+)
LOC111193190 NA coding downstream 1410657 12154923 ~ 12174659 (+)
G79399 NA non-coding upstream 90166 10651855 ~ 10652324 (+)
G79395 NA non-coding upstream 107478 10629959 ~ 10635012 (+)
G79381 NA non-coding upstream 184479 10477663 ~ 10558011 (+)
G79384 NA non-coding upstream 184986 10506337 ~ 10557504 (+)
G79379 LOC108430231,LOC107583545 non-coding upstream 273765 10452410 ~ 10468725 (+)
G79417 NA non-coding downstream 32433 10776699 ~ 10777628 (+)
G79423 NA non-coding downstream 46416 10790682 ~ 10792779 (+)
G79424 NA non-coding downstream 72971 10817237 ~ 10818744 (+)
G79444 NA non-coding downstream 194232 10938498 ~ 10955362 (+)
G79458 NA non-coding downstream 373323 11117589 ~ 11119528 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other upstream 185622 10538079 ~ 10556868 (+)
LOC103029457 LOC108441045 other upstream 787452 9883006 ~ 9955038 (+)
spata17 NA other upstream 1187765 9495449 ~ 9554725 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other upstream 2192522 8529854 ~ 8549968 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other downstream 57091 10801357 ~ 10814914 (+)
G79654 NA other downstream 810416 11554682 ~ 11555139 (+)
G79717 NA other downstream 1156829 11901095 ~ 11905385 (+)
G79761 LOC108438749 other downstream 1320578 12064844 ~ 12076211 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other downstream 1479011 12223277 ~ 12279506 (+)

Expression


Co-expression Network