G48270


Basic Information

Item Value
gene id G48270
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 12577495 ~ 12577940 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU54891
CTTTCTGTCCCTCCATTTAATATGATGAACAGTTTGAATTTAGGCTTTTATTCACATAAACATTCAACTCACATCAGTTGTGGTAAACTGAAGCACAAACGTGTTCCCTTTATGTGCAAGAACCAATGAGGTTCATTCTCGTGTGTTACACAGCACTTTGAGCTTCCGCAAGAACAAGCCGGTTCGTTGATCTTTTATGTTCGCTAATTAATGTTTATATGTGAATAAGAGCCTAAATTAAATCTGTTCATCATATAAAGCGACCGAGTCTCTTTAGAAAGTCTGGACTAAACCACTCAATTCATAAAGATTAGTTTTTACGATCTACAAAGTGGTAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54891 True 339 lncRNA 0.42 2 12577495 12577940

Neighbor

gene id symbol gene type direction distance location
CI01000006_12447621_12461167 NA coding upstream 116304 12447621 ~ 12461191 (+)
CI01000006_12345828_12346634 NA coding upstream 230575 12345828 ~ 12346920 (+)
CI01000006_12315343_12316143 RFESD coding upstream 261264 12315299 ~ 12316231 (+)
CI01000006_12307031_12307314 NA coding upstream 270176 12307031 ~ 12307319 (+)
CI01000006_12298229_12304430 UB2R2, CDC34, UBE2R2, UBE2R2.S, CDC34A, CDC34B coding upstream 272892 12297797 ~ 12304603 (+)
CI01000006_12592270_12606447 NA coding downstream 13898 12591838 ~ 12607314 (+)
CI01000006_12608120_12620040 NA coding downstream 30180 12608120 ~ 12620111 (+)
CI01000006_12684154_12695960 DNAJC21 coding downstream 105621 12683561 ~ 12696396 (+)
CI01000006_12764729_12782405 NA coding downstream 185976 12763916 ~ 12783368 (+)
CI01000006_12808989_12841786 NEDD4L coding downstream 231049 12808989 ~ 12842198 (+)
G48075 NA non-coding upstream 6334 12350762 ~ 12571161 (+)
G48122 NA non-coding upstream 44821 12519346 ~ 12532674 (+)
G48251 NA non-coding upstream 77295 12497354 ~ 12500200 (+)
G48101 NA non-coding upstream 227924 12308142 ~ 12349571 (+)
G48086 NA non-coding upstream 316151 12259495 ~ 12261344 (+)
G48079 NA non-coding downstream 2385 12580325 ~ 12582476 (+)
G48278 NA non-coding downstream 101554 12679494 ~ 12679697 (+)
G48284 NA non-coding downstream 102897 12680837 ~ 12681068 (+)
G48285 NA non-coding downstream 122725 12700665 ~ 12700892 (+)
G48286 NA non-coding downstream 123203 12701143 ~ 12701430 (+)
G48081 NA other upstream 192668 12377006 ~ 12384827 (+)
G48094 NA other upstream 297954 12277620 ~ 12279541 (+)
G47318 NA other upstream 939243 11624267 ~ 11638252 (+)
G47159 NA other upstream 1055792 11416229 ~ 11521703 (+)
G47145 NA other upstream 2065689 10485358 ~ 10511806 (+)

Expression


Co-expression Network