G79424


Basic Information

Item Value
gene id G79424
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10817237 ~ 10818744 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU107024
AGGCTACTGTGTGATATTTCTGAAAAGCAGTGGGCTTTATTCCAACTACTAAAAACAAGCATCCATGTAGTGTAAGTTCCTCAGTGAAGACAATTTTTCtagcaaaaataaaagtaactacgAACATGGTGGAACACCGagaaatcaagttttttttttttctacagtagcCGTGACAAATACAGGAATGCTAACAAAATCTCAAAATATGCTCATCAGAAAATGAtacacaatgaaaaaaaaaatgtcttcagctttgttttttctataaaaatacactatattttaaataacattactttaaattaatccTTGAAAATAACACTCATTTGTATTTGTCAGAGTAGTTCATAGAGTCCACCTTAATTATAAACATCTAAATATCGTTTCCACCAAAAGGATCAAAAGCACAGAATGAAACGAGTCCCTTGCTGTCATAAATTCAATACAGTTGGTCAAGCTTGCATCACAGATAAAGGCCCTGAGTCATTAATAAATATCAGTATTACCCCAACAAATGTACTCAAAATATGGCAAGCTGTCCTTTAAAAACATCATATGTTTAATTTCAATTAAAACCAATTCAGAATTAGAACACTCTCAAATCCAGTGTTCTGCAGATAAAACTCCATTCAGAGACAAACGAATGAAGTTTGTTCTCTCTGCAGGTTTGACTGCTATTGAAGATCCACGAAACACTGCGTTTAAGTGAATTAAACGAAACGAAATGCTCAAGGTTTACTCAAGCAGACCAGTTCAGATCAGTGATGAAGGCCATGATAATTATAATGGTTGCATTAATACTACAAAAAGCCTATacaagaataatttaataatgtaaaattcaACAAAACGAAACAACATAGAAATGTGTCCCAAGCTACAACTTTTTAGGTCGTACTCAGCTCTTTACAGTCCCTTATTCACACAGCAACCCACAGAACACTTTAATTATTGAACAAATTAAACTAAAGGCAGTTTTTATTTCAGTCCATCTCCCTTAACTTTCAGTAACTAACCTCCTGTTCGGATTCTGGGTGTCctcactataaaaaaataataataatgctagttTTGAACAGAAGTATTTATTGTGTGGCAGTATGTTTCTATTTCTAATTGtactttattacattacatttgctTAGTTTAGTGCTTAACCTTTAGACCTTTTATGTCAGCCCACAACGCACAGCCTCACAACTACAGTGCTATAATTTTTACCGTCAGTTTCATACGCCCTACCAAAGAGCCCTGTGGAACTCCACAAAACATGCCAACCAGTTGATAACCAAGTAATTCCCAATAGTTTTTGCAAAAGGATTAATAGCTGAATTATTAACCTAGGGTTAAAGGGTGTGCtctttttcttagtttttggGTTTGTTCTAAtatacacaaagaaaaaaaatgcgaTAATTTTCTAGAAACATTTTAGGGGTGCCAACACTTTGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107024 True 1457 lncRNA 0.34 3 10817237 10818744

Neighbor

gene id symbol gene type direction distance location
LOC103024809 LOC107689792,LOC105902344 coding upstream 52523 10727848 ~ 10764714 (+)
LOC111193128 NA coding upstream 150563 10664458 ~ 10666674 (+)
LOC103027561 NA coding upstream 455192 10352414 ~ 10362045 (+)
LOC103026974 NA coding upstream 480521 10328968 ~ 10336716 (+)
LOC103026492 NA coding upstream 524944 10282665 ~ 10292293 (+)
LOC103032219 slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804 coding downstream 758495 11577239 ~ 11637984 (+)
pex13 pex13 coding downstream 991489 11810233 ~ 11823175 (+)
kiaa1841 kiaa1841 coding downstream 1067492 11886236 ~ 11962874 (+)
LOC103021592 xpo1b,LOC108438731,LOC108269901,LOC107715966,LOC107744605,LOC107583557 coding downstream 1184049 12002793 ~ 12040710 (+)
LOC111193190 NA coding downstream 1336179 12154923 ~ 12174659 (+)
G79423 NA non-coding upstream 24458 10790682 ~ 10792779 (+)
G79417 NA non-coding upstream 39609 10776699 ~ 10777628 (+)
G79412 NA non-coding upstream 72971 10742490 ~ 10744266 (+)
G79399 NA non-coding upstream 164913 10651855 ~ 10652324 (+)
G79395 NA non-coding upstream 182225 10629959 ~ 10635012 (+)
G79444 NA non-coding downstream 119754 10938498 ~ 10955362 (+)
G79458 NA non-coding downstream 298845 11117589 ~ 11119528 (+)
G79483 NA non-coding downstream 501799 11320543 ~ 11466093 (+)
G79501 NA non-coding downstream 637155 11455899 ~ 11456234 (+)
LOC107197512 NA non-coding downstream 656900 11475644 ~ 11479120 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 2323 10801357 ~ 10814914 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other upstream 260369 10538079 ~ 10556868 (+)
LOC103029457 LOC108441045 other upstream 862199 9883006 ~ 9955038 (+)
spata17 NA other upstream 1262512 9495449 ~ 9554725 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other upstream 2267269 8529854 ~ 8549968 (+)
G79654 NA other downstream 735938 11554682 ~ 11555139 (+)
G79717 NA other downstream 1082351 11901095 ~ 11905385 (+)
G79761 LOC108438749 other downstream 1246100 12064844 ~ 12076211 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other downstream 1404533 12223277 ~ 12279506 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 2903157 13721901 ~ 13807027 (+)

Expression


Co-expression Network