fam98a (fam98a,LOC107583540,LOC107744493,LOC107670808)


Basic Information

Item Value
gene id fam98a
gene name fam98a,LOC107583540,LOC107744493,LOC107670808
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10801357 ~ 10814914 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU107028
AGTTAAAGGAGGCGTTATCCAAAGTCCCTCCCACTCATGTCGGGGGACCTCTCCTGAAAAAAACACTTGGTCCACTGCACTGGGAGAAAATCGTAGCCATCAACCAAGCACTTGTGAACGAGTATGAAGTCAGGAGGAAAATGTTGTTAAAACGTCTGGATGTGACGGTCCAGTCCTTCGGCTGGTCAGACAAAGCCAAGAGTCAAAAAGAAAAGCTGGCCAAAGTGTACCAACCCCTGCGCTCAGCTCTTGCCATTAAGGGTAAAATATCTGTGGCCAATCTGCTGGCTGCCAGAGAGGACTTATCAAAGATTCTGCGCACAAGCAGCGGCCACATCAGAGAAAAGACTGCCTGTTCCATTAACAAGGTTTTGATGGGTCGCGTTCCCGACCGAGGAGGTCGTCCCAATGAGATTGAGCCCCCGCCTCCAGAGATGCCCACCTGGCAGAAGCGGCAAGACGGACCTCAAGGAGGCGGCGGAGGACAATACTACGGCGGTGGTG
>XM_007238735.3
ATTTGTTgattctgtatttaaaaacagattaaacatttacaaactGATTTTGCTGAGTTGTCCCATAAGAACCAGTTCATAGAGCTCCCTGAAGACGCTGTTAAATGGGTGGTCTCCTCTCTATACGCTCTCTGGCGGTTATGCCAACCCAGCAGCCAGGCGCCCGGTCCTGTCAGTCTCGGTAAAGAGGCGGTTTGTGATTTTTGGGGAGCGCTGCGTCGCTTCGACTGAATGGAAGTCGATATTCTGGATTCTCTGGAGGACCTGGGgtaTCAGGGTCCCCTGTTGGAAGATGGCTCTCTGCAAATGGCCCTTAGTGGTGGAGCTGCTTCACCCGAGTTTACTAAGCTGTGTGCCTGGCTCGTCTCTGAGCTCAAACTCTACTGCAGGCTGGAGGAGAATGTGCACGCCACCAACTGTCCAAGCGAAGCTGAGGGTTTCCAGCTGGAGATGAGTGGTCTGCTTACTGAACTGGCCTGCCCGTATTCCTGTCTCACCTCAGGAGATGTCACTCGCCGCCTTCTCAACGCCAACAACTGCCAGCTACTGCTCACCTTTCTGATCTCTGAGCTTGAGGCTTCGAGGATGGTGTTGGTGAACCAGCCTCAGAAGAAAGCGCAGGACACAGGGGGCAGCACAGGTGCCAGTGAACTCTTCCTGGAACTCAAGGGGATTTGTATGGCTTTGGGTATGTCTAAACCTCCAGCCAACATCACCATGTTCCAGTTCTTCAGTGGCATTGAGAAGAAGTTAAAGGAGGCGTTATCCAAAGTCCCTCCCACTCATGTCGGGGGACCTCTCCTGAAAAAAACACTTGGTCCACTGCACTGGGAGAAAATCGTAGCCATCAACCAAGCACTTGTGAACGAGTATGAAGTCAGGAGGAAAATGTTGTTAAAACGTCTGGATGTGACGGTCCAGTCCTTCGGCTGGTCAGACAAAGCCAAGAGTCAAAAAGAAAAGCTGGCCAAAGTGTACCAACCCCTGCGCTCAGCTCTTGCCATTAAGGGTAAAATATCTGTGGCCAATCTGCTGGCTGCCAGAGAGGACTTATCAAAGATTCTGCGCACAAGCAGCGGCCACATCAGAGAAAAGACTGCCTGTTCCATTAACAAGGTTTTGATGGGTCGCGTTCCCGACCGAGGAGGTCGTCCCAATGAGATTGAGCCCCCGCCTCCAGAGATGCCCACCTGGCAGAAGCGGCAAGACGGACCTCAAGGAGGCGGCGGAGGACAATACTACGGCGGTGGTGGTGGacggggaggaggaggaggtggtggcAGAGGTGGCTACGACCATCACCAAGGGGGCAGAGGGGACGGAGGTGGCGGCAGAGGGGACAGGGGGAGTAAGGTACAGGGAGGATGGTCGGATGGCTCTGACCAGCGTGGAGGAGGTGGGTACCACGGCCATTACCAAGATGGAGGAGGATATCAGGGAGGTGGTGGCGGTGGTGGAGGACGAGGAGGATAcggaggtggaggtggtggcGGCTACCAGCAGGGCTCTGGGTACTACCAGGGTGGCCAGCAAGGATAccaaggaggaggaggtggctATCAAGGTGGTCAGCAAGGGCCAGGCTAccaaggaggaggaggaggaggcggcggTGGCGGGTACCAAGGTGGGGGTGGACATCAGGGCAGAGGCGGGGGCTACCAGCATGATGGCCACTATCAAGACGGGGGCCGTCAACAGGATAGAGGCGGCAGGGGCGGCCGTGGAGGGAGAGGACGAGGTGGTAGagggggtggaggaggaggtCAAGGTGGAGGAtggggaggaagaggagggcaGAATTTTAACCAAGGCGGGCAGTTTGAGCAGTACTTCCAACAGGGCGGCCAACAGTACAGTCAGTCAGGCTTCGGGCAGGGCCGACATTACACCAGCTGAAGGAGGAGAGCCTTGGAGAGTCCAGGCTGGTCAGAGAGCATCATCAGAGGGGGAGAGGGAGGCCAGCGAggtgcaggtcagtgcagtgacAGACAGGTCGTTGTCAGCGATCTCTTACCCCGGGGAACGTAGGTTAAGATTTTGGAATGAACGATGTATGCTTCCTCGCATGCGTGTGGTTGCCAACAAACAAGCTCGTGTTCTTTCTACACCTTTCCTAACTGCTAAGCTCATTCTCCAAGAGCACGTGGCTGAGATGCCAACGGTGGCTCCATCAGACGTCTGTTAGATGCCTCAAGAGATTTTAATATCACCTCTGTTAGGTCACTTGCTTGAGctgccccccaaaaaaaaaggcCTTATACCTGATATTGTTTCCCAGGGGAAATTAGAAGTTTCAAGATTTCATTGTTAGACTATTATTTATTGACACACCATAACCTCTTAAGTTCATTTCACGGTTTCTTAGACACGTTCAGCCAACCTCATTGCGTACATTGATCGATACTTGAAATAATTGAAACTttgttagggtttttttttctgttttgctttaaGTGTTGGTTTACAGTTACTCCTTGGAAGATAAGAATGAGGGAGTTGGCTGGGGAAAACGTCATGTAGCGTGTATACAAGGGTTACTTTTCCCCATTACGTGGAAAAAAGAACTAAACAAAAGGACTTTGCCTCATTTCATTTAAAGAAGCCAGTGCTGCTTGTTGGACCGCGTTCCTTTTTGTGAAAGTATTTTGAATGAGTAAGATTGCTCTGAGCaataaagcagtgtgtgaacgctc

Function

symbol description
fam98a Predicted to be part of tRNA-splicing ligase complex. Orthologous to human FAM98A (family with sequence similarity 98 member A).

NR:

description
LOW QUALITY PROTEIN: protein FAM98A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107028 False 504 TUCP 0.53 4 10807371 10813470
XM_007238735.3 True 2696 mRNA 0.52 8 10801357 10814914

Neighbor

gene id symbol gene type direction distance location
LOC103024809 LOC107689792,LOC105902344 coding upstream 36643 10727848 ~ 10764714 (+)
LOC111193128 NA coding upstream 134683 10664458 ~ 10666674 (+)
LOC103027561 NA coding upstream 439312 10352414 ~ 10362045 (+)
LOC103026974 NA coding upstream 464641 10328968 ~ 10336716 (+)
LOC103026492 NA coding upstream 509064 10282665 ~ 10292293 (+)
LOC103032219 slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804 coding downstream 762325 11577239 ~ 11637984 (+)
pex13 pex13 coding downstream 995319 11810233 ~ 11823175 (+)
kiaa1841 kiaa1841 coding downstream 1071322 11886236 ~ 11962874 (+)
LOC103021592 xpo1b,LOC108438731,LOC108269901,LOC107715966,LOC107744605,LOC107583557 coding downstream 1187879 12002793 ~ 12040710 (+)
LOC111193190 NA coding downstream 1340009 12154923 ~ 12174659 (+)
G79423 NA non-coding upstream 8578 10790682 ~ 10792779 (+)
G79417 NA non-coding upstream 23729 10776699 ~ 10777628 (+)
G79412 NA non-coding upstream 57091 10742490 ~ 10744266 (+)
G79399 NA non-coding upstream 149033 10651855 ~ 10652324 (+)
G79395 NA non-coding upstream 166345 10629959 ~ 10635012 (+)
G79424 NA non-coding downstream 2323 10817237 ~ 10818744 (+)
G79444 NA non-coding downstream 123584 10938498 ~ 10955362 (+)
G79458 NA non-coding downstream 302675 11117589 ~ 11119528 (+)
G79483 NA non-coding downstream 505629 11320543 ~ 11466093 (+)
G79501 NA non-coding downstream 640985 11455899 ~ 11456234 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other upstream 244489 10538079 ~ 10556868 (+)
LOC103029457 LOC108441045 other upstream 846319 9883006 ~ 9955038 (+)
spata17 NA other upstream 1246632 9495449 ~ 9554725 (+)
G78817 gale,LOC107583591,LOC107721820,LOC107583106 other upstream 2251389 8529854 ~ 8549968 (+)
G78818 NA other upstream 2263675 8535916 ~ 8537682 (+)
G79654 NA other downstream 739768 11554682 ~ 11555139 (+)
G79717 NA other downstream 1086181 11901095 ~ 11905385 (+)
G79761 LOC108438749 other downstream 1249930 12064844 ~ 12076211 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other downstream 1408363 12223277 ~ 12279506 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 2906987 13721901 ~ 13807027 (+)

Expression


Co-expression Network