G79501



Basic Information


Item Value
gene id G79501
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11455899 ~ 11456234 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU107109
cgcgatgaaacgaaacagactctaaccgagcggatctcggctgcgctccgctccgcacctaaaacctctcgcgatgaaacgaaaccgactCTAACCCGCTCGTTTTCATCGCAGGACATTTTAGATGAAGAATGAGCGGATAGTTGAGGGaggcaggtctaattcagtggttcggCGTTCAAAGGTTTGATAAACCTCAAGCAgattcactacacacaatatcttccttattctggctaaaacacttttgtagtttatgtt

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU107109 True 261 lncRNA 0.46 2 11455899 11456234

Neighbor


gene id symbol gene type direction distance location
LOC103024809 LOC107689792,LOC105902344 coding upstream 691185 10727848 ~ 10764714 (+)
LOC111193128 NA coding upstream 789225 10664458 ~ 10666674 (+)
LOC103027561 NA coding upstream 1093854 10352414 ~ 10362045 (+)
LOC103026974 NA coding upstream 1119183 10328968 ~ 10336716 (+)
LOC103026492 NA coding upstream 1163606 10282665 ~ 10292293 (+)
LOC103032219 slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804 coding downstream 121005 11577239 ~ 11637984 (+)
pex13 pex13 coding downstream 353999 11810233 ~ 11823175 (+)
kiaa1841 kiaa1841 coding downstream 430002 11886236 ~ 11962874 (+)
LOC103021592 xpo1b,LOC108438731,LOC108269901,LOC107715966,LOC107744605,LOC107583557 coding downstream 546559 12002793 ~ 12040710 (+)
LOC111193190 NA coding downstream 698689 12154923 ~ 12174659 (+)
G79458 NA non-coding upstream 336371 11117589 ~ 11119528 (+)
G79444 NA non-coding upstream 500537 10938498 ~ 10955362 (+)
G79424 NA non-coding upstream 637155 10817237 ~ 10818744 (+)
G79423 NA non-coding upstream 663120 10790682 ~ 10792779 (+)
G79417 NA non-coding upstream 678271 10776699 ~ 10777628 (+)
LOC107197512 NA non-coding downstream 19410 11475644 ~ 11479120 (+)
G79504 NA non-coding downstream 39350 11495584 ~ 11498178 (+)
G79637 LOC100136012 non-coding downstream 70614 11526848 ~ 11527186 (+)
G79638 NA non-coding downstream 75323 11531557 ~ 11531807 (+)
G79639 NA non-coding downstream 75664 11531898 ~ 11532150 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 640985 10801357 ~ 10814914 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other upstream 899031 10538079 ~ 10556868 (+)
LOC103029457 LOC108441045 other upstream 1500861 9883006 ~ 9955038 (+)
spata17 NA other upstream 1901174 9495449 ~ 9554725 (+)
G78818 NA other upstream 2918217 8535916 ~ 8537682 (+)
G79654 NA other downstream 98448 11554682 ~ 11555139 (+)
G79717 NA other downstream 444861 11901095 ~ 11905385 (+)
G79761 LOC108438749 other downstream 608610 12064844 ~ 12076211 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other downstream 767043 12223277 ~ 12279506 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 2265667 13721901 ~ 13807027 (+)

Expression



Co-expression Network