LOC107197512


Basic Information

Item Value
gene id LOC107197512
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11475644 ~ 11479120 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU107110
GTAACCAGTCGTGCCGGGTAAGGCACTTTTCATCGGACCATGGCTCAAATTTGCTGCCACGTTCGGAGCTCTAGGAAGCTTCCAGGGGCTTCAGGAGGCACAGAGCAATCAGCGGAAGGTGACGGGGGGTTGGGTTTGAAGCTGCAGCCTCTGTTGTAGATCCTCGCACCTCTGCCTCATGTGAGGACTGCTGGGAAAGTGAGAATGAGCGCTGCTAAAGAGGAGCTAATTACATTTCTGtagctaacaaaaaaaaaaaggcagcgGGAAAAAGCCAGGCAAGGAGGGAAACACAAGAGACGGAGAGGGGTGacggagaaaagagaaaaggcgGGAGGGAGGCAGAGAGATGGTGGGGGCGGATACATTTGTCACCATGCCTGTGTGATGTTCTTCTCGAGCTGCTAAGAGGGtcaaagagacagaaagagcaaAGGAGGAGAGAATGAACGTGTGCATGTGGAGGAGAAAGGAacagcgagagggagagagacggaatgtgagtgagagggagggggCTGTGGTGGCGTtcgggagagggagggagaatggagagaatgagagcgagggagaaagagagagggaaacagaaagagagggaggagaggaaaGCAAAGGATTTCTCAGAGCCCTGTGAACGCTGCTGAAAGCTGTTAGCTGCTAGCCGCTCAGTAAGGTGGATAAAGAACAAATAACGCAACAGCAGAGGCACCGGGCGACCACTGCAAGAACAAAACAGGGGCTTAACCCAGGCTAGGGCTGGGGAAATAAAAACCACGGAACACGGACTACGAGACaatgtatgagagagagagagggtgagcgagagagggaagagagagaggggagggacGCTGGGGACTGAAAGCGCCGTCTGCTCtgcgtaacacacacacagctcagcacagctcaCGGAGATGCCGCTGTAGACCTGCTCTCGCGCTCCCGCTCCATTCAGCTTTctctgtaatttttttcctcCTTCGGGGCTCGGGGACGGCCGACTGTTGGCCAGCTGGCCCTCATGTGGGCCCCGGCCCAGCGACCCCTCTACTGTGAGGACCCTGGGGCATGTCGCCTCCCAAGGCTAGCCTCACACACTGTAGGATAAACAACAGGGAGCGAAAGGTGGGCGTTCAGGATGGGCACGACGACCATCAGCATTGAGGAGGTGCGAGCGCTCGAAGGGAAGGAGGAGAGGGAAGAGTCCATCCTGGCTTTGCTGGGCATCATCGGGACTTTCCTTAACCTCTTTGTCATCGTCTTCGTCTACATCTACACCACCCTGTGAGGTCTCAGAGTTTGGGAGGGagaagcaacaaaaaaaaaaaacgaatatagGTGACTGTGCTTGGCCATAGGTGAAGGtgtgaaagagggagagggTGGGAGTGGGTGGGGCCAGAGGACAGAGATATGTTGGAAGACGGGGAGGACGAATACCACAGTGAAGACCTGGGAAGATAACACTGGGCCGCACTGGATGGACAGTAGGGGGCGCTAAGGACAGATCATGGGACTTTTTTGGCTGGACAGCAAGTACACAAAAGGTTAAGGAACACTGGACCATCCAGGGAGGTAACAAAACAACAGCAGAGAGCAAAAGGTGATTAACATTGGacagaaaatgaatgaatttagGCAAATTAAGTAAGCAGCAGAAAGGGACTCTGTGTAAGACCAAACAAGGGACTGTGGATCTGCTGTACTGGAGTCCTACTTCATCAACAGGACTACTTGATGATCACTCTAGGACACAGAAGAGGGTACTCTTATGCCAAAACATATGCTGAAACCCTGCACTTAAGAAATTGGATATAAATTGGTGACATGCATCGACCAGCACTGGAACCCTGTGGGTCAATGTCAAAGATTGGCCCTCTTACATCCATATCTTCTGGGCTTGCTCTTGATATCTCAATCACATTGGCAAGAAGGAAATTACATTCTCCCTGGTACCGCAATTATGTCAAGTCGCGTCGAGCTTCCATGATGTGGACTTCAAACTTGCGAAGTGCGTCTCAAACAGATGCACACTCTGCGGAAAGTATCACAGGGAAGGCTATGTCAGTGTTCCCTTATTACTGCAACAACGAACAAAAGTGAAAGATCGGACTGTTCCACTCGCCAACGCTTCCAGCAGAAGAGCTGAGATGGGATCTGCAATAAGAACTGTGTGTGGAAGAGAGGGGGTTGGGAGAGATCGAGAAATATTTttctactttaaattaaaacgGAACTGGTTCGTGGGGATGAAGGTACGAGGAAAGAAAGCAAGTAACATCTCTTGGATGGTTAGAAACACTACCAGATATGTGAGGTATACAGGCTATGCTGAAGCTATTGGACAGACTGGtccttgtctttttttctttttattccagCATGGTTCAACTTGCTGTCCGACTGCCAgcagagaaggaaaaaaggacAAACCCTTGTCTATTGCCTCTCCCTGATGTCAGGGTGGGGCTAAACATACATTTCTGTACAAAGGACAAAAGCttttatatgaatatattattaccTAATAGATGTACTGTGCAATAGAACATTTGatcaataaaatgaaat
>XR_001518605.2
gagggagaatggagagaatgagagcgagggagaaagagagagggaaacagaaagagagggaggagaggaaaGCAAAGGATTTCTCAGAGCCCTGTGAACGCTGCTGAAAGCTGTTAGCTGCTAGCCGCTCAGTAAGGTGGATAAAGAACAAATAACGCAACAGCAGAGGCACCGGGCGACCACTGCAAGAACAAAACAGGGGCTTAACCCAGGCTAGGGCTGGGGAAATAAAAACCACGGAACACGGACTACGAGACaatgtatgagagagagagagggtgagcgagagagggaagagagagaggggagggacGCTGGGGACTGAAAGCGCCGTCTGCTCtgcgtaacacacacacagctcagcacagctcaCGGAGATGCCGCTGTAGACCTGCTCTCGCGCTCCCGCTCCATTCAGCTTTctctgtaatttttttcctcCTTCGGGGCTCGGGGACGGCCGACTGTTGGCCAGCTGGCCCTCATGTGGGCCCCGGCCCAGCGACCCCTCTACTGTGAGGACCCTGGGGCATGTCGCCTCCCAAGGCTAGCCTCACACACTGTAGGATAAACAACAGGGAGCGAAAGGTGGGCGTTCAGGATGGGCACGACGACCATCAGCATTGAGGAGGTGCGAGCGCTCGAAGGGAAGGAGGAGAGGGAAGAGTCCATCCTGGCTTTGCTGGGCATCATCGGGACTTTCCTTAACCTCTTTGTCATCGTCTTCGTCTACATCTACACCACCCTGTGAGGTCTCAGAGTTTGGGAGGGagaagcaacaaaaaaaaaaaacgaatatagGTGACTGTGCTTGGCCATAGGTGAAGGtgtgaaagagggagagggTGGGAGTGGGTGGGGCCAGAGGACAGAGATATGTTGGAAGACGGGGAGGACGAATACCACAGTGAAGACCTGGGAAGATAACACTGGGCCGCACTGGATGGACAGTAGGGGGCGCTAAGGACAGATCATGGGACTTTTTTGGCTGGACAGCAAGTACACAAAAGGTTAAGGAACACTGGACCATCCAGGGAGGTAACAAAACAACAGCAGAGAGCAAAAGGTGATTAACATTGGacagaaaatgaatgaatttagGCAAATTAAGTAAGCAGCAGAAAGGGACTCTGTGTAAGACCAAACAAGGGACTGTGGATCTGCTGTACTGGAGTCCTACTTCATCAACAGGACTACTTGATGATCACTCTAGGACACAGAAGAGGGTACTCTTATGCCAAAACATATGCTGAAACCCTGCACTTAAGAAATTGGATATAAATTGGTGACATGCATCGACCAGCACTGGAACCCTGTGGGTCAATGTCAAAGATTGGCCCTCTTACATCCATATCTTCTGGGCTTGCTCTTGATATCTCAATCACATTGGCAAGAAGGAAATTACATTCTCCCTGGTACCGCAATTATGTCAAGTCGCGTCGAGCTTCCATGATGTGGACTTCAAACTTGCGAAGTGCGTCTCAAACAGATGCACACTCTGCGGAAAGTATCACAGGGAAGGCTATGTCAGTGTTCCCTTATTACTGCAACAACGAACAAAAGTGAAAGATCGGACTGTTCCACTCGCCAACGCTTCCAGCAGAAGAGCTGAGATGGGATCTGCAATAAGAACTGTGTGTGGAAGAGAGGGGGTTGGGAGAGATCGAGAAATATTTttctactttaaattaaaacgGAACTGGTTCGTGGGGATGAAGGTACGAGGAAAGAAAGCAAGTAACATCTCTTGGATGGTTAGAAACACTACCAGATATGTGAGGTATACAGGCTATGCTGAAGCTATTGGACAGACTGGtccttgtctttttttctttttattccagCATGGTTCAACTTGCTGTCCGACTGCCAgcagagaaggaaaaaaggacAAACCCTTGTCTATTGCCTCTCCCTGATGTCAGGGTGGGGCTAAACATACATTTCTGTACAAAGGACAAAAGCttttatatgaatatattattaccTAATAGATGTACTGTGCAATAGAACATTTGatcaataaaatgaaatgtattcAGAGGGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107110 True 2574 lncRNA 0.50 2 11475644 11479105
XR_001518605.2 False 2049 lncRNA 0.49 2 11476184 11479120

Neighbor

gene id symbol gene type direction distance location
LOC103024809 LOC107689792,LOC105902344 coding upstream 710930 10727848 ~ 10764714 (+)
LOC111193128 NA coding upstream 808970 10664458 ~ 10666674 (+)
LOC103027561 NA coding upstream 1113599 10352414 ~ 10362045 (+)
LOC103026974 NA coding upstream 1138928 10328968 ~ 10336716 (+)
LOC103026492 NA coding upstream 1183351 10282665 ~ 10292293 (+)
LOC103032219 slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804 coding downstream 98119 11577239 ~ 11637984 (+)
pex13 pex13 coding downstream 331113 11810233 ~ 11823175 (+)
kiaa1841 kiaa1841 coding downstream 407116 11886236 ~ 11962874 (+)
LOC103021592 xpo1b,LOC108438731,LOC108269901,LOC107715966,LOC107744605,LOC107583557 coding downstream 523673 12002793 ~ 12040710 (+)
LOC111193190 NA coding downstream 675803 12154923 ~ 12174659 (+)
G79483 NA non-coding upstream 9551 11320543 ~ 11466093 (+)
G79501 NA non-coding upstream 19410 11455899 ~ 11456234 (+)
G79458 NA non-coding upstream 356116 11117589 ~ 11119528 (+)
G79444 NA non-coding upstream 520282 10938498 ~ 10955362 (+)
G79424 NA non-coding upstream 656900 10817237 ~ 10818744 (+)
G79504 NA non-coding downstream 16464 11495584 ~ 11498178 (+)
G79637 LOC100136012 non-coding downstream 47728 11526848 ~ 11527186 (+)
G79638 NA non-coding downstream 52437 11531557 ~ 11531807 (+)
G79639 NA non-coding downstream 52778 11531898 ~ 11532150 (+)
G79640 NA non-coding downstream 53214 11532334 ~ 11532864 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 660730 10801357 ~ 10814914 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other upstream 918776 10538079 ~ 10556868 (+)
LOC103029457 LOC108441045 other upstream 1520606 9883006 ~ 9955038 (+)
spata17 NA other upstream 1920919 9495449 ~ 9554725 (+)
G78818 NA other upstream 2937962 8535916 ~ 8537682 (+)
G79654 NA other downstream 75562 11554682 ~ 11555139 (+)
G79717 NA other downstream 421975 11901095 ~ 11905385 (+)
G79761 LOC108438749 other downstream 585724 12064844 ~ 12076211 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other downstream 744157 12223277 ~ 12279506 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 2242781 13721901 ~ 13807027 (+)

Expression


Co-expression Network