G79695


Basic Information

Item Value
gene id G79695
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11779824 ~ 11784827 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU107374
AACACCTTTTAATCCTGTACAACACCCCTACAACACCCTACAGTCCTGTACAACACCCCTACAACACCCTACAGTCCTGTACAACACCCCTACAACACCTTTTAATCCTGTACAACAACCCTACAATAACCTACAGTTCTGTACAACACCCCTACAACACCCTACAGTCCTGTACAACAGCCCTACAACACCTTTTAATCCTGTACAACACCCCTACAACAACCTACAGTTCTGTACAACACCCCTACAACACCCTACAGTTTTGTACAACACCCCTACAGTCCTGTACAACACCCCTACAACACCTTTTAATCCTGTACAACACCCCTACAACAACCTACAGTCCTGTACAACACCCCTACAACACCTTTTAATCCTGTACAACACCCCTACAACAACCTACAGTCCTGTACAACACCCCTACAACACCTTTTAATCTTGTACAACACCCCTACAATAACATACAGTCCTGTACAACACCCCTACAACACCCTACAGATCTATACAACACCCCTACAACACCCTACAGTCCTGTACAACACCCCTACAACACCCTACAGTCCTGTACAACACCCCTACAAC
>TU107375
CCTACAGTCCTGTACAACACCCCTACAACACCCTACAGTCCTGTACAACACCCCTACAACACCTTTTAATCCTGTACAACAACCCTACAATAACCTACAGTTCTGTACAACACCCCTACAACACCCTACAGTCCTGTACAACAGCCCTACAACACCTTTTAATCCTGTACAACACCCCTACAACAACCTACAGTTCTGTACAACACCCCTACAACACCCTACAGTTTTGTACAACACCCCTACAGTCCTGTACAACACCCCTACAACACCTTTTAATCCTGTACAACACCCCTACAACAACCTACAGTCCTGTACAACACCCCTACAACACCTTTTAATCCTGTACAACACCCCTACAACAACCTACAGTCCTGTACAACACCCCTACAACACCTTTTAATCTTGTACAACACCCCTACAATAACATACAGTCCTGTACAACACCCCTACAACACCCTACAGATCTATACAACACCCCTACAACACCCTACAGTCCTGTACAACACCCCTACAACACCCTACAGTCCTGTACAACACCCCTACAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107374 True 582 lncRNA 0.46 3 11779824 11784827
TU107375 False 546 lncRNA 0.46 2 11784221 11784827

Neighbor

gene id symbol gene type direction distance location
LOC103032219 slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804 coding upstream 141840 11577239 ~ 11637984 (+)
LOC103024809 LOC107689792,LOC105902344 coding upstream 1015110 10727848 ~ 10764714 (+)
LOC111193128 NA coding upstream 1113150 10664458 ~ 10666674 (+)
LOC103027561 NA coding upstream 1417779 10352414 ~ 10362045 (+)
LOC103026974 NA coding upstream 1443108 10328968 ~ 10336716 (+)
pex13 pex13 coding downstream 25406 11810233 ~ 11823175 (+)
kiaa1841 kiaa1841 coding downstream 101409 11886236 ~ 11962874 (+)
LOC103021592 xpo1b,LOC108438731,LOC108269901,LOC107715966,LOC107744605,LOC107583557 coding downstream 217966 12002793 ~ 12040710 (+)
LOC111193190 NA coding downstream 370096 12154923 ~ 12174659 (+)
LOC103024200 LOC108438733 coding downstream 403931 12188758 ~ 12261237 (+)
G79692 NA non-coding upstream 32245 11747044 ~ 11747579 (+)
G79684 NA non-coding upstream 77450 11700680 ~ 11702374 (+)
G79683 NA non-coding upstream 87660 11691816 ~ 11692164 (+)
G79659 NA non-coding upstream 219715 11559780 ~ 11560109 (+)
LOC111193197 NA non-coding upstream 233050 11546280 ~ 11546774 (+)
G79702 NA non-coding downstream 15473 11800300 ~ 11814470 (+)
G79704 NA non-coding downstream 33926 11818753 ~ 11821081 (+)
LOC111193193 kiaa1841 non-coding downstream 49942 11834769 ~ 11874478 (+)
G79710 NA non-coding downstream 70946 11855773 ~ 11868709 (+)
G79712 NA non-coding downstream 80562 11865389 ~ 11869720 (+)
G79654 NA other upstream 224685 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 964910 10801357 ~ 10814914 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other upstream 1222956 10538079 ~ 10556868 (+)
LOC103029457 LOC108441045 other upstream 1824786 9883006 ~ 9955038 (+)
spata17 NA other upstream 2225099 9495449 ~ 9554725 (+)
G79717 NA other downstream 116268 11901095 ~ 11905385 (+)
G79761 LOC108438749 other downstream 280017 12064844 ~ 12076211 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other downstream 438450 12223277 ~ 12279506 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 1937074 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 2141042 13925869 ~ 13952198 (+)

Expression


Co-expression Network