G79702


Basic Information

Item Value
gene id G79702
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11800300 ~ 11814470 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU107386
atatacatatatagtattatgtagtttatatatatatatatatatatatatatatatatatatatatatattatatatatataatatatatatatatatatatatatatatatatatatattcacctaTATAAAGTCACAAAGTACCCAATTTTGCTTCTCTGTGAGGTTTTGCAATCTGCAGTGTGGTAACTGATAATGAGGAGTTCCTggagaaaataattattaatgctCCCTGTTACTTTTTCCCAAATAATGCACATTTAACCCAACCTGCTTTTTCCTCTCTGATCCAGCTGGCAGGGAAATTAATGTTATTTCTTTGTGCATACTCAAAATTGTTGGTCTAAAATTAAGAATGTCACATAGATTTAGTGATAAAATGTAAGATTACAATGTACTGTACTGGCACAAATTACCCCAACCCCActattttggggaaaaaatccATCATCCAGTAGTTTTGGGCAAACATGCTAGCTGTATAGACTCATAGTGTAGCTTACCAAAGCACTAAAACTTGTGAAATGTTTTCAAACTTGTCTGTAACTGTTGAGACACAACAATCAAAATGGTTGACTTTTCAAAAATGTGTGGTCACATCACCAATTTCTTCTGTGGTTCTCTAGAAACAGGGGGTGGCACAACTTCCCTACTGGCACAAATCAGCCCATTTAACCCTATAtatagggctgcagctatcgattattttagtaatagagtactctactgaaaaatcgattcgattaatcgagtaatcggatgaaacatatttgtttgcttaaagagtaattaaaaatacacaaaaaaacaagccatttcacttaataatgaataaccaattgatttgcttttttagataagttatattttaaattcacaacacacatttccaaactgcaaacacaaatagaaataaataaataaataataatgtaataattagtgctttaataaattaagtgaaattattttcaacaaggatttcttgtaagtatcaaaactatagtgaattaatcaataaaaaagacataaacatttgcattatgttgtgcatcttagcttctgaacagcagagatgttgcAGTTCCTCTCACCAGGACGGTgacatgtatttgtttataaactccacagcgctgtgttcacttacataaagcctgtattaagtccagaattgtctgttttaataaaactaataacacATCAGACAGTATTACTAATAGTCAGCGCTCCACAGCACTGTCATTAtgttattaaggtacattaatattaatcgCATTGATTTGttaataagttatattaacctTCTCTCGGCTCCACCGCTAACGTGTCCTCGGCTGAGACGCAGCATTAAACCGTGCTGTTGTGGGAGGCAAGAGCGAATGTACGCTGTTCATTCTAAAAAGCTCCATTATTATTACACTTTTTGCTCGTAAGATGTCGCTCTTTTCCCTCGGCGCTTCAAAATACCCTCCTCTCAACCAAAAACCTTTGTGCGGGTGACGTAACGCTGAGCGCGTTGTCacattaaaagcatgaattacCGCGCgctgagtttttttatttaaataaataaatactcgagatatatatatatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107386 True 1598 lncRNA 0.32 2 11800300 11814470

Neighbor

gene id symbol gene type direction distance location
LOC103032219 slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804 coding upstream 162316 11577239 ~ 11637984 (+)
LOC103024809 LOC107689792,LOC105902344 coding upstream 1035586 10727848 ~ 10764714 (+)
LOC111193128 NA coding upstream 1133626 10664458 ~ 10666674 (+)
LOC103027561 NA coding upstream 1438255 10352414 ~ 10362045 (+)
LOC103026974 NA coding upstream 1463584 10328968 ~ 10336716 (+)
kiaa1841 kiaa1841 coding downstream 71766 11886236 ~ 11962874 (+)
LOC103021592 xpo1b,LOC108438731,LOC108269901,LOC107715966,LOC107744605,LOC107583557 coding downstream 188323 12002793 ~ 12040710 (+)
LOC111193190 NA coding downstream 340453 12154923 ~ 12174659 (+)
LOC103024200 LOC108438733 coding downstream 374288 12188758 ~ 12261237 (+)
LOC103034755 asmt2,LOC108438736,LOC108270049,LOC107654826,LOC105908292,LOC106611414,LOC107721495,LOC107668509 coding downstream 475927 12290397 ~ 12312938 (+)
G79695 NA non-coding upstream 15473 11779824 ~ 11784827 (+)
G79694 NA non-coding upstream 16151 11773690 ~ 11784149 (+)
G79692 NA non-coding upstream 52721 11747044 ~ 11747579 (+)
G79684 NA non-coding upstream 97926 11700680 ~ 11702374 (+)
G79683 NA non-coding upstream 108136 11691816 ~ 11692164 (+)
G79704 NA non-coding downstream 4283 11818753 ~ 11821081 (+)
LOC111193193 kiaa1841 non-coding downstream 20299 11834769 ~ 11874478 (+)
G79710 NA non-coding downstream 41303 11855773 ~ 11868709 (+)
G79712 NA non-coding downstream 50919 11865389 ~ 11869720 (+)
LOC111193192 NA non-coding downstream 177202 11991672 ~ 11997924 (+)
G79654 NA other upstream 245161 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 985386 10801357 ~ 10814914 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other upstream 1243432 10538079 ~ 10556868 (+)
LOC103029457 LOC108441045 other upstream 1845262 9883006 ~ 9955038 (+)
spata17 NA other upstream 2245575 9495449 ~ 9554725 (+)
G79717 NA other downstream 86625 11901095 ~ 11905385 (+)
G79761 LOC108438749 other downstream 250374 12064844 ~ 12076211 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other downstream 408807 12223277 ~ 12279506 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 1907431 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 2111399 13925869 ~ 13952198 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G158516 NA non-coding NC_053126.1 CM020923.1 27670542 ~ 27674081 (-)