G79704


Basic Information

Item Value
gene id G79704
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11818753 ~ 11821081 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU107392
attttatttatttttgcatttttgtcgtACTTAAATTTTTCCggttatcaaacaaactttaatataagtcaaatataacctgagtaaatataaaattaactttttaaattatgattttacttattaagagagaaaaactatctagatagatagatagatagtctctttacaaaagacaaaagaccccccccataaattaactgtgattaatctcaCTTTTTGTAAAACTGAGTTCAGTTTCACTACTATCCACAACCAGGACTggttactgccagacctgtataatcaagaaatcacttaaatagaacctgtctaacaacatgaagcagctaaaagatctcaaaaagcaacaaattatgcccgatctgaagaaattcaaaaaccaTTGAGAAAACTAAGTCACTGATcttctatcagtctggaaaaggttataaagtaagGCTTTGGAACTCACAACAGGCCAcaatgagagctattattcacaaatggaaacATTTGGTGAACCTGTCCAACTGAAAATATTCTAAAAGGGCATGGAaaactcatccagaaggtcacaaaagaaaCCAGAACACCATTTAAAGGACTGCAGGCcacacttgcctcagttaaggtcagtgttaatgattcaataataataaagagacTGGGTAAAAATATTCTCCATGGGAGATTTCCAAAGCAAAAAAACACTACTGAACAAAATGAACACAACGgtccattttccattttccaaAAAACATCTGACATCTGAACTTTGCGCAAATATTCTTAGGACTGATGTGACAAAaggtgtgtcccattacatctgacgtaaaatgaacacacattttcacaaaaaGACCATCATTCTGAACGTAataacatggtggtggtagtgtgctggtgtggggctgctttgctgcttcagggtttgAATAACATGCTGTGattgatggaaccaggaattctgctgttcaccagacaatccTGATCTAAAGCTCACGCGTACtttggttctgcagcaggacaatgatccaaagcacacaaacgcatccacctctgaatggcctaAAACAAGCATAAGGTTTTTAACTTATGACTAAAATGAAAATACTCATTTAATTTTACCAGTAGTCACCGTGCGTAATTCTAGGACCAGCATTTTCCATaatcacaaaaagaaaaatacaaatcatttgaacagttttattaatacaaataacTTAATTTACATAGGTCCTTCTCCATTTCAATTGTCATCTTATTAAATCCACCATAGAcccttttaatgattttaattattctGCATTTAAATATCAAAAGCCTACTGCATAAAGATAAAATGAACCAATTAAAAAGTTCAGCTGCTCAGGCTAATCTCGATAGCAGTGAGCAAAATTCACTTAACTTTTAACAGTACTGATGTGGATGTTGCACTAGAACATTTTCAGGAAATCATTCTTTTCAGTGGCAAATAAACATGCTCCACAcaaaaaaagtgtgaataaGAGACAGATCTAGCTCCTGGTTTATGGGAGAAAATTTCTCACtgctacagtaaaaaaaaaaaaagcaagaaataaaTAAGCTCCTCTAATCCACAAGATTTCTGAAAAGCAGTAAATTCCCTCAAAAACAACTCCCAACAAATCTCAACTAAAATTCtagttaataataatttgatttctgaacagcAAGAACTGTGCCAAGCTTTTAATGTACACTTTGCTGCAGCTGGtcagatatttaaaaacactgactCAAACCTGCATGTAAATCAGCCTATCATTACTACTACTGCCTTTCCAGAAAATCGATATCTTCATCCTACAGACCTGCTCCTGGACCCCTACCTTCTGCGTCTCACAACCCCAGTTATTTTAGaatatattacatacatttttaatctttctgtttttatcttgCAGAATTTACAGTATCTGGAAAACAGCTCATGTTATTCCTCTACATAAAGAAGGAGATGCAGCAGATCTAAATAATTACAGACCAATCTTAAAACTGTCTTCTTCAtccaaaatgtttaaatccCTAATGAATAACCAGCTCAAGTATTTTCTTTATGAAAACTGTATAACAATCAATCTGAAATTAAAGAAAGACATTGCACCATCTCTGACCCCACTCTAGTTTTAAATGatctacaacccctggcaaaaatgATGGAATCGCAGGCCTTGGAGGATGTTCATTCAGTTGTTtaattttatagaaaaaaagcaGATCACAGAAATGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107392 True 2237 lncRNA 0.34 3 11818753 11821081

Neighbor

gene id symbol gene type direction distance location
LOC103032219 slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804 coding upstream 180769 11577239 ~ 11637984 (+)
LOC103024809 LOC107689792,LOC105902344 coding upstream 1054039 10727848 ~ 10764714 (+)
LOC111193128 NA coding upstream 1152079 10664458 ~ 10666674 (+)
LOC103027561 NA coding upstream 1456708 10352414 ~ 10362045 (+)
LOC103026974 NA coding upstream 1482037 10328968 ~ 10336716 (+)
kiaa1841 kiaa1841 coding downstream 65155 11886236 ~ 11962874 (+)
LOC103021592 xpo1b,LOC108438731,LOC108269901,LOC107715966,LOC107744605,LOC107583557 coding downstream 181712 12002793 ~ 12040710 (+)
LOC111193190 NA coding downstream 333842 12154923 ~ 12174659 (+)
LOC103024200 LOC108438733 coding downstream 367677 12188758 ~ 12261237 (+)
LOC103034755 asmt2,LOC108438736,LOC108270049,LOC107654826,LOC105908292,LOC106611414,LOC107721495,LOC107668509 coding downstream 469316 12290397 ~ 12312938 (+)
G79702 NA non-coding upstream 4283 11800300 ~ 11814470 (+)
G79695 NA non-coding upstream 33926 11779824 ~ 11784827 (+)
G79694 NA non-coding upstream 34604 11773690 ~ 11784149 (+)
G79692 NA non-coding upstream 71174 11747044 ~ 11747579 (+)
G79684 NA non-coding upstream 116379 11700680 ~ 11702374 (+)
LOC111193193 kiaa1841 non-coding downstream 13688 11834769 ~ 11874478 (+)
G79710 NA non-coding downstream 34692 11855773 ~ 11868709 (+)
G79712 NA non-coding downstream 44308 11865389 ~ 11869720 (+)
LOC111193192 NA non-coding downstream 170591 11991672 ~ 11997924 (+)
G79752 NA non-coding downstream 204505 12025586 ~ 12026206 (+)
G79654 NA other upstream 263614 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 1003839 10801357 ~ 10814914 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other upstream 1261885 10538079 ~ 10556868 (+)
LOC103029457 LOC108441045 other upstream 1863715 9883006 ~ 9955038 (+)
spata17 NA other upstream 2264028 9495449 ~ 9554725 (+)
G79717 NA other downstream 80014 11901095 ~ 11905385 (+)
G79761 LOC108438749 other downstream 243763 12064844 ~ 12076211 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other downstream 402196 12223277 ~ 12279506 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 1900820 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 2104788 13925869 ~ 13952198 (+)

Expression


Co-expression Network