G79717


Basic Information

Item Value
gene id G79717
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11901095 ~ 11905385 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU107406
GCTCACGTTAGCCTTCTCCGGGCAGGCTCGCACCAGATGACCCGCTTGTCCACACCAAAAGCATTTTATATCGGTGTCAGTGGACACGTACACCGTGTAGTCAAACTCGTCCACTTTTAGTTTGAGGACCAGGTCCAGATCCTCCCCATCCTTCAGGTTCATTAAAACCATCCTCCTAAAGGACACAAGGTGCTTTAAAAGAGGCGATTTGAGTCCGAGACTAAGCCGTTTCACGGATGAGACCGGCTTCCCGTAGCGGGAAAGCTCACGCACGAGTAGCTCGTCCTTAATGAATGGGGGAACATTCGACAGTATTACCTTTCTCGCGGGGTACTGAGGGGCAACACCGGGAAGAGCTGACCGTTTATAATTACTCCTTTACTGATCAGGTCGTTCGCTCTTTCCACGGTGTTTAGAAACAGAACCATTGAGTTGTTCATGCGGGAGGCgaaatttatagttactgtgcagattttaaagtatattttatttttatagttgattgctgaaggctgtgGGTGAGATGTATTTTTACTGTGGTTAGGAATTGGTGGTATGGGgaatagactgtgtatagctggaaagagcattgtctctcaaaagtgaagccaccacaggtcgggcaccccctgctgttcggttgcagaaagctgtttaaccccacccatccccataggtttcaatggcaaagcagacaactttcaattatgtatttttcgattgaattcgttttttaaaacgttattcagctctattcaaaaaaggtttggttattgtaaaagggctggttatgggcgggaccaataacagaccattagctccgctctgcagcctatGAGCGCGAGGCAGCcttcaggggcggggttatttaaataaatctggtctctactgcgcagactccgGTTTCAGGATCGGCAAcatggcttcattttcatttaatgaatgggaacggcgacacgatgtccatcttttttacagtctctggtatggggtattttggagcgcagggtgaTCGTGATCGTGTTTTGGGCGCCAGTGACAGCTGAATTTCGACGTCCTTTCACAGGATCAATCGCCCAATCCgtttttctgctgccaagatagaaacacgccagaaatttacctgaacacgcgtcatttccagaccaccacgcccatctgcattaatatattccagaagtccaacgctattttaaggacacgtaatgtgtaaaaatagactgttgactgggTGTACGATGGCAACGCGCCACACTACACACCTTGGCGGGGTGTACGATAGAGCCCAAATACTTTGAATggctcagaaaaactgctaagaatccagAATTGGATTCcagcaatggaaatctgtacactactgtctgaaattttaatttaagtctttaaagcctcctctcacaaaaactgtataatactatataaataaaaaatggccaaaataaatcaatgctcacttttaaTTGCAtgtatcaaaataaaaacatgacatctctgtcaaacacaatatatacatatatatacatatacatattaccaatataaataactttacaacattacaacagaggcagagcttcttattcttttgtaaacaaatttaacagatcaaaacaaaagtgcttcaaccaggatAAGGAACACAAAAAGCATTAGAAAAACATAACATCCCTGTCAAATAAACAgacctataggctttatcaactataaataacttatatacaacataaactgtaaaagtgcttcagtcagaataaggaaaatattgtatgtagtgcaactgcttgaggtggtggaacagattagatgaaTTACCGCTAATGGTCTGCTCCACTCTACAGCACAATCTGCAGGAAGCTGAAGTCTGAAGTTTATCAGACCTTTAAAAGCCGAAACACTGAATTAGTCCTGCCTTCCTCAACTATGTCTTTCTgtttaatcacttgtggaaCATTCTGATACACTCATTCTGCATCTAAAATCTCCTGCACTGAAGCTGGGCCGGGCTCTGCTCGGCTTAAGCGCAGGACATTTTAGATGCGGACCGGAGTGCAGCCGAGCCGAGCTTAGTCGATTCtggcctagcctatctggctatgTGCCTTTATAATTATTTCATCACACACTGACCTAGCCTGGCTACGGAGGCTAGTTGTGTTCAGCTCGAACTGACGCTATTTCTTTTCGCAATAAATATGAAATGATTACATGATACACAGTATTGAATTATTGTCCTGCCCTTTTTATGACTATAAAGTTGTGCTGGGCAGTGTgttcaaaaatgtatatcacggtatttttcaagattctgacggtttcacagtatatcacagtgtttttatttattttatttatttatatatttttgcatgaccgggctttaatataggtctGTAACATattgtactgttaggagtacatataatatcaaacactaaggctttaaattaaggctctgattactattgggtttattttgtcccacaaagttacacaatatatgaagaaatcagactttattatcgtcttctacacagcgctcgtcttctacacagctctcctccactacacagctctcctcttctacacagcgctcctcttCTACACAGAGCTCCTCTTCTACACAGCTCTCCTCTTCTACACAGCTCTCCTCTTCTACACAGCTCTCCTCCACTACACAGCTCTCCtcttctacacagcgctcctcttctacacagctctcctcttctacacagctctcctcttctacacagctctcctcttctacacagctctcctccactacacagcgctcctcttctacacagcgctcctccactacacagctctcctcttctacacagctctcctccactacacagctctcctccactacacagcgctcctcttctacacagcgctcctcttCTACACAGCTCTCCTCTACTACACAGCTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107406 True 2938 TUCP 0.43 3 11901095 11905385

Neighbor

gene id symbol gene type direction distance location
pex13 pex13 coding upstream 77920 11810233 ~ 11823175 (+)
LOC103032219 slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804 coding upstream 263111 11577239 ~ 11637984 (+)
LOC103024809 LOC107689792,LOC105902344 coding upstream 1136381 10727848 ~ 10764714 (+)
LOC111193128 NA coding upstream 1234421 10664458 ~ 10666674 (+)
LOC103027561 NA coding upstream 1539050 10352414 ~ 10362045 (+)
LOC103021592 xpo1b,LOC108438731,LOC108269901,LOC107715966,LOC107744605,LOC107583557 coding downstream 97408 12002793 ~ 12040710 (+)
LOC111193190 NA coding downstream 249538 12154923 ~ 12174659 (+)
LOC103024200 LOC108438733 coding downstream 283373 12188758 ~ 12261237 (+)
LOC103034755 asmt2,LOC108438736,LOC108270049,LOC107654826,LOC105908292,LOC106611414,LOC107721495,LOC107668509 coding downstream 385012 12290397 ~ 12312938 (+)
jade1 jade1 coding downstream 409709 12315094 ~ 12338375 (+)
LOC111193193 kiaa1841 non-coding upstream 26617 11834769 ~ 11874478 (+)
G79712 NA non-coding upstream 31375 11865389 ~ 11869720 (+)
G79710 NA non-coding upstream 32386 11855773 ~ 11868709 (+)
G79704 NA non-coding upstream 80014 11818753 ~ 11821081 (+)
G79702 NA non-coding upstream 86625 11800300 ~ 11814470 (+)
LOC111193192 NA non-coding downstream 86287 11991672 ~ 11997924 (+)
G79752 NA non-coding downstream 120201 12025586 ~ 12026206 (+)
G79903 NA non-coding downstream 203424 12108809 ~ 12109104 (+)
G79914 NA non-coding downstream 250930 12156315 ~ 12161780 (+)
G79924 NA non-coding downstream 376460 12281845 ~ 12283581 (+)
G79654 NA other upstream 345956 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 1086181 10801357 ~ 10814914 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other upstream 1344227 10538079 ~ 10556868 (+)
LOC103029457 LOC108441045 other upstream 1946057 9883006 ~ 9955038 (+)
spata17 NA other upstream 2346370 9495449 ~ 9554725 (+)
G79761 LOC108438749 other downstream 159459 12064844 ~ 12076211 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other downstream 317892 12223277 ~ 12279506 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 1816516 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 2020484 13925869 ~ 13952198 (+)
LOC103028846 LOC108431654 other downstream 2608025 14513410 ~ 14534923 (+)

Expression


Co-expression Network