LOC111193192


Basic Information

Item Value
gene id LOC111193192
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11991672 ~ 11997924 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU107429
TTTGGTTGTGAAAAAGATGTTTCATAAGGCTCAAATTATTGACATGCATCAAGTAGAGAAAATGTAAAGATATTGTTGAAACTACTTCAATCAGGTTAAGAACTGCATTATTAGAGTAGAAGGACACAAATGTATCTTTAAAAATCTTGAATGATCATGATTGGTGATGACTTTCTgtgaaataaatcattaaaaaaacaacaccagaacaACACCAGGGATATGATTAATAGTGAGAGTAAGAGAATTTCTACAGGCACAATGTGAATGCAGACAAAAATGTCTTCAATATGCTATGGAGCATAAAGATTGGATGCTGGAGCAATGGAAGGTCATGTGGTCTGATAAGTCCTGATTTATCCTGTTTGTGAGTGAAGCTGGTGTTGGGTTTACGTGGGGATGAGTGTAAGGACTGAAAGGCGGGCTTCTCCAACCAGAGAGAGACGAACACATCCAAGGTTTTACGGAGCCGTAGTCCAAACCCCCCCTCCCCACAAGTGAATCGAGGGCCCTTCGATCACCCCTGAGAGAGCTGGAAGACCACTGAGGAAAGATATGAGGTGACCATCCGACGATCAGCGTCGCTCGACCAGGCACTGGTTTACTGCCATCACTCGTGACCATCCACCGATCAGCGTAGCTCCACCAAGTACTAGTCCACTGCCACCATTTGTGAGTGAAGCTGGTGTTGGGTTTACGTGGGGATGAGTGTAAGGACTGAAAGGCGGGCTTCTCCAACCAGAGAGAGACGAACACATCCAAGGTTTTACGGAGCCGTAGTCCAAACCCCCCCTCCCCACAAGTGAATCGAGGGCCCTTCGATCACCCCTGAGAGAGCTGGAAGACCACTGAGGAAAGATATGAGGTGAGTATTTACAGGTTACAAACAATAATCAACATGATGTATAAAGAAGTGCTGGTGATGTGTCAGGCCTATTGACAACATCACAc
>XR_002650322.1
TCATAAGGCTCAAATTATTGACATGCATCAAGTAGAGAAAATGTAAAGATATTGTTGAAACTACTTCAATCAGGTTAAGAACTGCATTATTAGAGTAGAAGGACACAAATGTATCTTTAAAAATCTTGAATGATCATGATTGGTGATGACTTTCTgtgaaataaatcattaaaaaaacaacaccagaacaACACCAGGGATATGATTAATAGTGAGAGTAAGAGAATTTCTACAGGCACAATGTGAATGCAGACAAAAATGTCTTCAATATGCTATGGAGCATAAAGATTGGATGCTGGAGCAATGGAAGGTCATGTGGTCTGATAAGTCCTGATTTATCCTGTTTGTGAGTGAAGCTGGTGTTGGGTTTACGTGGGGATGAGTGTAAGGACTGAAAGGCGGGCTTCTCCAACCAGAGAGAGACGAACACATCCAAGGTTTTACGGAGCCGTAGTCCAAACCCCCCCTCCCCACAAGTGAATCGAGGGCCCTTCGATCACCCCTGAGAGAGCTGGAAGACCACTGAGGAAAGATATGAGGTGACCATCCGACGATCAGCGTCGCTCGACCAGGCACTGGTTTACTGCCATCACTCGTGACCATCCACCGATCAGCGTAGCTCCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107429 True 951 lncRNA 0.45 4 11991672 11997924
XR_002650322.1 False 626 lncRNA 0.44 3 11991693 11997143

Neighbor

gene id symbol gene type direction distance location
kiaa1841 kiaa1841 coding upstream 28798 11886236 ~ 11962874 (+)
pex13 pex13 coding upstream 168497 11810233 ~ 11823175 (+)
LOC103032219 slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804 coding upstream 353688 11577239 ~ 11637984 (+)
LOC103024809 LOC107689792,LOC105902344 coding upstream 1226958 10727848 ~ 10764714 (+)
LOC111193128 NA coding upstream 1324998 10664458 ~ 10666674 (+)
LOC103021592 xpo1b,LOC108438731,LOC108269901,LOC107715966,LOC107744605,LOC107583557 coding downstream 4869 12002793 ~ 12040710 (+)
LOC111193190 NA coding downstream 156999 12154923 ~ 12174659 (+)
LOC103024200 LOC108438733 coding downstream 190834 12188758 ~ 12261237 (+)
LOC103034755 asmt2,LOC108438736,LOC108270049,LOC107654826,LOC105908292,LOC106611414,LOC107721495,LOC107668509 coding downstream 292473 12290397 ~ 12312938 (+)
jade1 jade1 coding downstream 317170 12315094 ~ 12338375 (+)
LOC111193193 kiaa1841 non-coding upstream 117194 11834769 ~ 11874478 (+)
G79712 NA non-coding upstream 121952 11865389 ~ 11869720 (+)
G79710 NA non-coding upstream 122963 11855773 ~ 11868709 (+)
G79704 NA non-coding upstream 170591 11818753 ~ 11821081 (+)
G79702 NA non-coding upstream 177202 11800300 ~ 11814470 (+)
G79752 NA non-coding downstream 27662 12025586 ~ 12026206 (+)
G79903 NA non-coding downstream 110885 12108809 ~ 12109104 (+)
G79914 NA non-coding downstream 158391 12156315 ~ 12161780 (+)
G79924 NA non-coding downstream 283921 12281845 ~ 12283581 (+)
G80024 NA non-coding downstream 515078 12513002 ~ 12542649 (+)
G79717 NA other upstream 86287 11901095 ~ 11905385 (+)
G79654 NA other upstream 436533 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 1176758 10801357 ~ 10814914 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other upstream 1434804 10538079 ~ 10556868 (+)
LOC103029457 LOC108441045 other upstream 2036634 9883006 ~ 9955038 (+)
G79761 LOC108438749 other downstream 66920 12064844 ~ 12076211 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other downstream 225353 12223277 ~ 12279506 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 1723977 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 1927945 13925869 ~ 13952198 (+)
LOC103028846 LOC108431654 other downstream 2515486 14513410 ~ 14534923 (+)

Expression


Co-expression Network