G79761 (LOC108438749)


Basic Information

Item Value
gene id G79761
gene name LOC108438749
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12064844 ~ 12076211 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU107454
GGTGGATCTTGCGAGTTCAGCAAAAGCTGCATACCGCAGTTCTGTATCTCAGGATGTAAGGAGGAGTTTCCATGTGATTCCAGAAAATCCGCAGGAGGCCAAAACTCTCAAACGCTCTCTCACCATCTTCAGAAACGTGATCTTTTCTCTGAGTTCTGCAGGATGTCAACATGTTCCCTACAGAGAGTCTAAACTCACCCGCTCACTGAGAGACTG
>TU107455
CTCAGAGATGTGTACGAGTCAACAGCCCAGCCCTTGCTGGAGTATTTAATGAAGGGATATAATGGGTGTGTAATTGCATACAGGCCCCCTAACAGCAGGGACCCCTGTGGCAGACTGAGGGGCATCATCAGCTGGGCTGCTGATGACATCTTCAGCTCTCCAGAGTACTCTCACTGTACTGTAGTCAGAGCATCCTTCTACCACATCTCCAATGAGAAGATCTATGACCTGCTGGAGCCTCAGGTGAGCGAGGTGTGCCGTATTCATGACACAGAGGAAGCAGTGCTTCTGGAAGGGCTGAGAGAGGTGGAGGTGAGCTCCTCCCAGGAACTACTGCATGTATACTACAGTGGGACTGCCCACAGGAACACAGGTGTTTCGAAGGGTGATTTTGCCAGCAAGTCTCACATGGTGTTCAACATCATGatcacaaacacaaaagacCAGTCTGATAACGAGGGACCTCTAACATTTGGCAAGCTCACTCTGGTGGATCTTGCGAGTTCAGCAAAAGCTGCATACCGCAGTTCTGTATCTCAGGATGTAAGGAGGAGTTTCCATGTGATTCCAGAAAATCCGCAGGAGGCCAAAACTCTCAAACGCTCTCTCACCATCTTCAGAAACGTGATCTTTTCTCTGAGTTCTGCAGGATGTCAACATGTTCCCTACAGAGAGTCTAAACTCACCCGCTCACTGAGAGACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107454 False 216 lncRNA 0.48 3 12073570 12076211
TU107455 True 704 TUCP 0.50 9 12064844 12076211

Neighbor

gene id symbol gene type direction distance location
LOC103021592 xpo1b,LOC108438731,LOC108269901,LOC107715966,LOC107744605,LOC107583557 coding upstream 24134 12002793 ~ 12040710 (+)
kiaa1841 kiaa1841 coding upstream 101970 11886236 ~ 11962874 (+)
pex13 pex13 coding upstream 241669 11810233 ~ 11823175 (+)
LOC103032219 slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804 coding upstream 426860 11577239 ~ 11637984 (+)
LOC103024809 LOC107689792,LOC105902344 coding upstream 1300130 10727848 ~ 10764714 (+)
LOC111193190 NA coding downstream 78712 12154923 ~ 12174659 (+)
LOC103024200 LOC108438733 coding downstream 112547 12188758 ~ 12261237 (+)
LOC103034755 asmt2,LOC108438736,LOC108270049,LOC107654826,LOC105908292,LOC106611414,LOC107721495,LOC107668509 coding downstream 214186 12290397 ~ 12312938 (+)
jade1 jade1 coding downstream 238883 12315094 ~ 12338375 (+)
exo1 LOC107744706,LOC107081139 coding downstream 457646 12533857 ~ 12549090 (+)
G79752 NA non-coding upstream 38638 12025586 ~ 12026206 (+)
LOC111193192 NA non-coding upstream 66920 11991672 ~ 11997924 (+)
LOC111193193 kiaa1841 non-coding upstream 190366 11834769 ~ 11874478 (+)
G79712 NA non-coding upstream 195124 11865389 ~ 11869720 (+)
G79710 NA non-coding upstream 196135 11855773 ~ 11868709 (+)
G79903 NA non-coding downstream 32598 12108809 ~ 12109104 (+)
G79914 NA non-coding downstream 80104 12156315 ~ 12161780 (+)
G79924 NA non-coding downstream 205634 12281845 ~ 12283581 (+)
G80024 NA non-coding downstream 436791 12513002 ~ 12542649 (+)
G80026 yipf4,LOC106576945 non-coding downstream 446493 12522704 ~ 12523100 (+)
G79717 NA other upstream 159459 11901095 ~ 11905385 (+)
G79654 NA other upstream 509705 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 1249930 10801357 ~ 10814914 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other upstream 1507976 10538079 ~ 10556868 (+)
LOC103029457 LOC108441045 other upstream 2109806 9883006 ~ 9955038 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other downstream 147066 12223277 ~ 12279506 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 1645690 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 1849658 13925869 ~ 13952198 (+)
LOC103028846 LOC108431654 other downstream 2437199 14513410 ~ 14534923 (+)
G80648 NA other downstream 2649716 14725927 ~ 14728799 (+)

Expression


Co-expression Network