LOC103044397 (pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512)


Basic Information

Item Value
gene id LOC103044397
gene name pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12223277 ~ 12279506 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU107660
gaaaacacaaagaaatctgggctaaaaacacagaaaaaatatggggtgaaaacacaaaaatccgggataaaaacaccaaaaatccggggtgaatatgtctcgtcggtcagagcaaattgaacatttttcagtggattaaaggggccgtgatttgcttttttttttttttttttttttttttttacaatttaaaataagtcGACTGTTTTATTTGTCCCAATTCCTCCCCCTTCTGCCCCCTTTTGATGCATATACCCCATGATAAAACAGTCTGAGTAGAAATTGTGCCTTATTTGTGTTCTTTTAtatgtccaaaaaaaaatcctgtacgGTGAAAAGCAAGAAACAGGATGAAGAATTGAAGGGAGGGTTTTGGGCAGGgagattaaacaaataaaaccacaAGCATAGAGTAAAACCGATTTGAAAACTCGTCCCATTCTCTCGCTCTGCTGTTGTTGGTGTTCAACCACACCATAATGCCTCCCTTTTCAAATGAAACGTTCAGATGACCAAAAGGCATGTTTCAAACCTGAGACCTGAGAGAGTCCacgacacccccccccccctcccctcttcCCACCCACCCTTCCACCCCAAAACTACTTCTGTGCAACCTTTGTACATAGACTTAAAGTATTCAGTGTTACTGCCATGTTTATGTAGTTAATGGACTCTATGTACTACTACTGTGCTGTATTGGCCATAAGTCTATttcatcattctctctctctttatttggcGCTCCCATCTTTGGTTTTCTCTGCTGACGTTCTTTTTAAGTGTGGAAGAAATTGTGCGATGTGTTCTTGGAGCAGGCCATGGGGTGCGGAGGAttgaaaacactttttgttatttttatttttttggagctTTCTTAGatggggagggagggagggggggaggtGTAAGAGTagaataagttaaaaaaaaggtggATTCTGTAAATATGTGTTTCATTTTATTGAAGCATGTGCAGCATAACCATGAGCTAATGCTGTCTTTTCCCCACTTCATGTATTTAATTGTCAGGACTGTCTGTGTGAGCGCCTGCGTGTggggaggaggatgaagagacATGCTGATgcataaagcaaataaacagatttggataataaaac
>XM_022672733.1
TGTGCTGTGGGTCGGCGCTAACGCGCAGACAGTATGGCGGACGATGGGGATGGTAGgagcggagcagcagcaggcgACACAAGTGGCGGGCAGGGCGCGACGAGCACAGAGGAGCTGGATCCGGGGCCCGGCGTCGGCGCCATGCTGCTCAACCTCAGCATTTTAATCCTCGTGTTGGCCACCTGCTATGTCGTGTACAGACGGTGGCTGAGGCGGTCGGGCGCGGACGCGGCCGCGGCCAGCGAGGCCTCGCCGTTGCCCAAGATGGGCAGGCGCGACTTCACCCTGGAGCAGCTGCGGGAGTACGACGGGGCGCAGAACCCGCGCATCCTCATCGCCGTCAACATGAAGGTGTTTGACGTGACCAGCGGGAAGAAGTTTTACGGACGtgAGGGTCCGTATGGAATTTTTGCGGGCCGGGATGCCTCTCGTGGTTTGGCTACATTCTGTCTAGAGAAGGATGCACTGCGGGACGAGTATGATGACCTGTCAGATCTTAATGCGGTTCAGATGGAAAGTGTCAGGGAATGGGAGATGCAGTTtatggaaaaatatgACTATGTAGGTCGTCTGCTGAAGCCCGGTGACGAGCCGTCGGAGTACACAGACGAGGAGGACATTAAGGACCATCTGAAACACGACTGATGTGCTCCATCCATACAGCGACCAAAGCCTGAGACTCAGACCGCTaccatccaaccaacctgcCACTTATTGCCCAGACTACCCCATTTACCCCCATTACCCACACCAGGTTTCCCCCACCCTGCACCTTAACTAAACGCTCCAGACAGGTGTTTTGGTACCACTGCAGCAGAAGGCCTTCAGCAGCAACAGAGCTACACCCACGTGCTCCTGGCTGGGCTGGCTGTGGTGCGGTTTCACCATTTAATATGGGAGTATTAAATCTGTACTCACTTCAAGATATCCGTTCACACCTTGTTTTAAACTCCTGCCATTatctttactttcttttttccctctttgCCCAAATGGTTCTCAACCCCAGTTCTTATGAGCCTGCCTGATCGTTACCAAGCCAGTGATGATTGATTGTTGTtgagtttgtgagtgtgttttagcacagaaaGAACTCAATGTTTGTGTCTGTAGTTCATCACCATGGGTGCAATGGGTTCCctgtgattgattgattgatagaaGCTGAACAGCAGAAGCTCCCACAGACTATTCCTAATAGAGGGCGTTTTAAAAGTCAGTGCTTTTTTGACAGTGGAGAAGCATGTCAAATTAGCCAAATTTTAGTCAAGCCTGTCAGGTAGCAGAATGGTCTTATTGGACAAGCCACTCTCATAGACTGTGCTTGAGAGAACCCTGTTTGCTTAGCTTTTTGCTTTTTGGAGGGGTTTATTTGCCTGTTGCTCACAATGTTCACAAAGTTCTTTTCCCATCAAATCAAACCCACtactgaaacaataaaaaaggttGAGTATCTTTTTCCTCTTAGCTGAAACCCCCCCAATCCACAGCCGCCTTTCTTATATCCCATTTTACCTCTGCACAGTGAAGCAAGTCCTGGGACTTTCACTAAATCCTGCACATCTGCACGCTTGGGTCACGGGCCGAAAATGtgaaatgatttttaaaatgttgaatgAAACACACTGATGTTTCTCATACACACCCCCcccaaacatacacacaaacaacctGATTTCTGTTCACTTGTTTCTGTCGGGACATCACTGTTAAAGAGAGGGAACCTTGTGCTAatgggatggagagagagagagagagagagagagaaatggttCAGTGGTTcagtttttgaaaagatttAAAAGACTGGGTCAGGAAACACAGCTGGGTTCactcacatttttgttttttttgcttgttttgttaattttaacAGCTACCATTAATCTACTACCATTAATCAGCATTTTGAGGCTCGCTTTGTGGTGGGCTGTATTTTAGCTGGGGTAACTTTTCCCTCTAAATTTGAAAAGTGATTCTTGAGGCTAGTTGTTGACAATGTTGGCTGATCTGTGAATGGTTTAGGGGGAGGGAGGAAGGTTCTTAAgcattagtttagtttaagtaTTAGGTTATTTACTATACAGTGTGCTCTTTTAGTGGCACAGTTTTCGTTGTCACAGTGTGATGGTACACATTTGGGTAAAGGGGAAACAGGGTTTCTGTGGcaatggaggaggaggatgcaGGTTATCAGAAAAACATGTTAATCAGAATGGCTGTTTGGAACACAAagggaaatcttttttttttttttttttttttttttcttttcaatttaaaataagtcGACTGTTTTATTTGTCCCAATTCCTCCCCCTTCTGCCCCCTTTTGATGCATATACCCCATGATAAAACAGTCTGAGTAGAAATTGTGCCTTATTTGTGTTCTTTTAtatgtccaaaaaaaaatcctgtacgGTGAAAAGCAAGAAACAGGATGAAGAATTGAAGGGAGGGTTTTGGGCAGGgagattaaacaaataaaaccacaAGCATAGAGTAAAACCGATTTGAAAACTCGTCCCATTCTCTCGCTCTGCTGTTGTTGGTGTTCAACCACACCATAATGCCTCCCTTTTCAAATGAAACGTTCAGATGACCAAAAGGCATGTTTCAAACCTGAGACCTGAGAGAGTCCacgacacccccccccccctcccctcttcCCACCCACCCTTCCACCCCAAAACTACTTCTGTGCAACCTTTGTACATAGACTTAAAGTATTCAGTGTTACTGCCATGTTTATGTAGTTAATGGACTCTATGTACTACTACTGTGCTGTATTGGCCATAAGTCTATttcatcattctctctctctttatttggcGCTCCCATCTTTGGTTTTCTCTGCTGACGTTCTTTTTAAGTGTGGAAGAAATTGTGCGATGTGTTCTTGGAGCAGGCCATGGGGTGCGGAGGAttgaaaacactttttgttatttttatttttttggagctTTCTTAGatggggagggagggagggggggaggtGTAAGAGTagaataagttaaaaaaaaggtggATTCTGTAAATATGTGTTTCATTTTATTGAAGCATGTGCAGCATAACCATGAGCTAATGCTGTCTTTTCCCCACTTCATGTATTTAATTGTCAGGACTGTCTGTGTGAGCGCCTGCGTGTggggaggaggatgaagagacATGCTGATgcataaagcaaataaacagatttggataataaaaca
>XM_022672734.1
GGTGTGTGCTGTGGGTCGGCGCTAACGCGCAGACAGTATGGCGGACGATGGGGATGGTAGgagcggagcagcagcaggcgACACAAGTGGCGGGCAGGGCGCGACGAGCACAGAGGAGCTGGATCCGGGGCCCGGCGTCGGCGCCATGCTGCTCAACCTCAGCATTTTAATCCTCGTGTTGGCCACCTGCTATGTCGTGTACAGACGGTGGCTGAGGCGGTCGGGCGCGGACGCGGCCGCGGCCAGCGAGGCCTCGCCGTTGCCCAAGATGGGCAGGCGCGACTTCACCCTGGAGCAGCTGCGGGAGTACGACGGGGCGCAGAACCCGCGCATCCTCATCGCCGTCAACATGAAGGTGTTTGACGTGACCAGCGGGAAGAAGTTTTACGGACGtgAGGGTCCGTATGGAATTTTTGCGGGCCGGGATGCCTCTCGTGGTTTGGCTACATTCTGTCTAGAGAAGGATGCACTGCGGGACGAGTATGATGACCTGTCAGATCTTAATGCGGTTCAGATGGAAAGTGTCAGGGAATGGGAGATGCAGTTtatggaaaaatatgACTATGTAGGTCGTTGCTGAAGCCGGTGACGAGCCGTCGGAGTACACAGACGAGGAGGACATTAAGGACCATCTGAAACACGAC

Function

symbol description
pgrmc2 Acts upstream of or within oocyte maturation and ovulation. Predicted to be integral component of membrane. Predicted to be active in endomembrane system and membrane. Is expressed in several structures, including digestive system; gonad; heart; integument; and muscle. Orthologous to human PGRMC2 (progesterone receptor membrane component 2).

NR:

description
PREDICTED: membrane-associated progesterone receptor component 2-like

GO:

id name namespace
GO:0020037 heme binding molecular_function

KEGG:

id description
K17278 PGRMC1_2; membrane-associated progesterone receptor component

RNA

RNA id representative length rna type GC content exon number start site end site
TU107660 False 1121 lncRNA 0.40 2 12223277 12279505
XM_022672733.1 True 3212 mRNA 0.46 3 12263125 12279506
XM_022672734.1 False 644 mRNA 0.60 3 12263121 12274900

Neighbor

gene id symbol gene type direction distance location
LOC111193190 NA coding upstream 48618 12154923 ~ 12174659 (+)
LOC103021592 xpo1b,LOC108438731,LOC108269901,LOC107715966,LOC107744605,LOC107583557 coding upstream 182567 12002793 ~ 12040710 (+)
kiaa1841 kiaa1841 coding upstream 260403 11886236 ~ 11962874 (+)
pex13 pex13 coding upstream 400102 11810233 ~ 11823175 (+)
LOC103032219 slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804 coding upstream 585293 11577239 ~ 11637984 (+)
LOC103034755 asmt2,LOC108438736,LOC108270049,LOC107654826,LOC105908292,LOC106611414,LOC107721495,LOC107668509 coding downstream 10891 12290397 ~ 12312938 (+)
jade1 jade1 coding downstream 35588 12315094 ~ 12338375 (+)
exo1 LOC107744706,LOC107081139 coding downstream 254351 12533857 ~ 12549090 (+)
LOC103045432 NA coding downstream 285606 12565112 ~ 12579232 (+)
LOC103046040 NA coding downstream 461853 12741359 ~ 12748024 (+)
G79914 NA non-coding upstream 61497 12156315 ~ 12161780 (+)
G79903 NA non-coding upstream 114173 12108809 ~ 12109104 (+)
G79752 NA non-coding upstream 197071 12025586 ~ 12026206 (+)
LOC111193192 NA non-coding upstream 225353 11991672 ~ 11997924 (+)
LOC111193193 kiaa1841 non-coding upstream 348799 11834769 ~ 11874478 (+)
G79924 NA non-coding downstream 2339 12281845 ~ 12283581 (+)
G80024 NA non-coding downstream 233496 12513002 ~ 12542649 (+)
G80026 yipf4,LOC106576945 non-coding downstream 243198 12522704 ~ 12523100 (+)
G80028 NA non-coding downstream 249120 12528626 ~ 12531849 (+)
G80031 NA non-coding downstream 302294 12581800 ~ 12667992 (+)
G79761 LOC108438749 other upstream 147066 12064844 ~ 12076211 (+)
G79717 NA other upstream 317892 11901095 ~ 11905385 (+)
G79654 NA other upstream 668138 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 1408363 10801357 ~ 10814914 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other upstream 1666409 10538079 ~ 10556868 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 1442395 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 1646363 13925869 ~ 13952198 (+)
LOC103028846 LOC108431654 other downstream 2233904 14513410 ~ 14534923 (+)
G80648 NA other downstream 2446421 14725927 ~ 14728799 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 2451002 14730508 ~ 14798604 (+)

Expression


Co-expression Network