G80024


Basic Information

Item Value
gene id G80024
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12513002 ~ 12542649 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU107798
tctctcctaaatgGCAGTAAATATCTCTcctagtggcagtaagccgtaacctcgcgggtaatacaatcgacaagcattgtgggaaatgtagtttttggtcaaagaatgcttctgacctatttattatggacactaagattttacaagctctcgcgggccacataaaaggacgtggcgggccacatttggcccgcgggccttgtgtttgacacatgtggtttggagagacatgtcatctgctggtgttgatccactgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107798 True 257 lncRNA 0.47 2 12513002 12542649

Neighbor

gene id symbol gene type direction distance location
jade1 jade1 coding upstream 174627 12315094 ~ 12338375 (+)
LOC103034755 asmt2,LOC108438736,LOC108270049,LOC107654826,LOC105908292,LOC106611414,LOC107721495,LOC107668509 coding upstream 200064 12290397 ~ 12312938 (+)
LOC103024200 LOC108438733 coding upstream 251765 12188758 ~ 12261237 (+)
LOC111193190 NA coding upstream 338343 12154923 ~ 12174659 (+)
LOC103021592 xpo1b,LOC108438731,LOC108269901,LOC107715966,LOC107744605,LOC107583557 coding upstream 472292 12002793 ~ 12040710 (+)
LOC103045432 NA coding downstream 22463 12565112 ~ 12579232 (+)
LOC103046040 NA coding downstream 198710 12741359 ~ 12748024 (+)
LOC103025054 slc16a12,LOC107669179,LOC107753457,LOC107758438 coding downstream 267018 12809667 ~ 12820803 (+)
LOC103047786 NA coding downstream 428782 12971431 ~ 12986601 (+)
LOC103021501 NA coding downstream 447082 12989731 ~ 13021102 (+)
G79924 NA non-coding upstream 229421 12281845 ~ 12283581 (+)
G79914 NA non-coding upstream 351222 12156315 ~ 12161780 (+)
G79903 NA non-coding upstream 403898 12108809 ~ 12109104 (+)
G79752 NA non-coding upstream 486796 12025586 ~ 12026206 (+)
LOC111193192 NA non-coding upstream 515078 11991672 ~ 11997924 (+)
G80031 NA non-coding downstream 39151 12581800 ~ 12667992 (+)
G80114 NA non-coding downstream 279309 12821958 ~ 12823957 (+)
G80138 pten,ptena,LOC104929647,LOC108411875,LOC107670848,LOC103360879,LOC103387686 non-coding downstream 333124 12875773 ~ 12886581 (+)
G80166 LOC103025372 non-coding downstream 412667 12955316 ~ 12957340 (+)
G80176 NA non-coding downstream 444814 12987463 ~ 12987842 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 233496 12223277 ~ 12279506 (+)
G79761 LOC108438749 other upstream 436791 12064844 ~ 12076211 (+)
G79717 NA other upstream 607617 11901095 ~ 11905385 (+)
G79654 NA other upstream 957863 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 1698088 10801357 ~ 10814914 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 1179252 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 1383220 13925869 ~ 13952198 (+)
LOC103028846 LOC108431654 other downstream 1970761 14513410 ~ 14534923 (+)
G80648 NA other downstream 2183278 14725927 ~ 14728799 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 2187859 14730508 ~ 14798604 (+)

Expression


Co-expression Network