G80026 (yipf4,LOC106576945)



Basic Information


Item Value
gene id G80026
gene name yipf4,LOC106576945
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12522704 ~ 12523100 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU107800
CCGGAACTGTCCGTAGATGGAGATCATTGAGAAGAGGAGCACGACAGCCAAAGGCCCCCAGAAGTCAGGGTTGTCCCGGACCACCTGTCTGTTGAATCCCAGTGAGGGCATTGGCATCAGCACACATCTGACCTTATAGTAGATGTCCTTCAAGTCAATATCCAGCTCCTCCAGCAGAGGCTTAGTGTCCTCAGCCTcgtcctcctccacctccagcaACCAGCCGTAACCCCTCTGCCTAAGGAATGTGGTGGCATACGCATCCTTGCCCTGATCACCGCCCATGTTCAGCTTGATATCAGGGGCATCGATGGTCCCACTC

Function


symbol description
yipf4 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and vesicle fusion with Golgi apparatus. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in trans-Golgi network. Orthologous to human YIPF4 (Yip1 domain family member 4).

NR:

description
protein YIPF4

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU107800 True 322 lncRNA 0.55 2 12522704 12523100
Loading

Neighbor


gene id symbol gene type direction distance location
jade1 jade1 coding upstream 184329 12315094 ~ 12338375 (+)
LOC103034755 asmt2,LOC108438736,LOC108270049,LOC107654826,LOC105908292,LOC106611414,LOC107721495,LOC107668509 coding upstream 209766 12290397 ~ 12312938 (+)
LOC103024200 LOC108438733 coding upstream 261467 12188758 ~ 12261237 (+)
LOC111193190 NA coding upstream 348045 12154923 ~ 12174659 (+)
LOC103021592 xpo1b,LOC108438731,LOC108269901,LOC107715966,LOC107744605,LOC107583557 coding upstream 481994 12002793 ~ 12040710 (+)
exo1 LOC107744706,LOC107081139 coding downstream 10757 12533857 ~ 12549090 (+)
LOC103045432 NA coding downstream 42012 12565112 ~ 12579232 (+)
LOC103046040 NA coding downstream 218259 12741359 ~ 12748024 (+)
LOC103025054 slc16a12,LOC107669179,LOC107753457,LOC107758438 coding downstream 286567 12809667 ~ 12820803 (+)
LOC103047786 NA coding downstream 448331 12971431 ~ 12986601 (+)
G79924 NA non-coding upstream 239123 12281845 ~ 12283581 (+)
G79914 NA non-coding upstream 360924 12156315 ~ 12161780 (+)
G79903 NA non-coding upstream 413600 12108809 ~ 12109104 (+)
G79752 NA non-coding upstream 496498 12025586 ~ 12026206 (+)
LOC111193192 NA non-coding upstream 524780 11991672 ~ 11997924 (+)
G80028 NA non-coding downstream 5526 12528626 ~ 12531849 (+)
G80031 NA non-coding downstream 58700 12581800 ~ 12667992 (+)
G80114 NA non-coding downstream 298858 12821958 ~ 12823957 (+)
G80138 pten,ptena,LOC104929647,LOC108411875,LOC107670848,LOC103360879,LOC103387686 non-coding downstream 352673 12875773 ~ 12886581 (+)
G80166 LOC103025372 non-coding downstream 432216 12955316 ~ 12957340 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 243198 12223277 ~ 12279506 (+)
G79761 LOC108438749 other upstream 446493 12064844 ~ 12076211 (+)
G79717 NA other upstream 617319 11901095 ~ 11905385 (+)
G79654 NA other upstream 967565 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 1707790 10801357 ~ 10814914 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 1198801 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 1402769 13925869 ~ 13952198 (+)
LOC103028846 LOC108431654 other downstream 1990310 14513410 ~ 14534923 (+)
G80648 NA other downstream 2202827 14725927 ~ 14728799 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 2207408 14730508 ~ 14798604 (+)

Expression


G80026(yipf4,LOC106576945) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

G80026(yipf4,LOC106576945) Expression in each Bioproject

Bar chart with 4 bars.
G80026(yipf4,LOC106576945) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network