G80031


Basic Information

Item Value
gene id G80031
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12581800 ~ 12667992 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU107829
GCGCATTTCTAACGGTCAAATACAGTAAGTGTTTTGCATTTAAACATCACGAAGtggactctctctctttttgagaGGCTGTGTATAACGGCACCTTTAAGCCCTTTAATGTAGGCTGTGCTTAGACTTACACTCCTTTCTACTTACTATTTCTTACTACTCACTCCTAATTAATTACTGCCACAATTAGCATCAGTTTCACAAAccgtaaaaaaaacagagccctgtgggactccagaAAATGTGCCaaactgtttaactgtttaattcATAATTGCTTCTGCATTCTTATAACTCAATCAAAAACTTAAAAGAGTTCAATGTGTTTCAAATTCCCTGTATTTAAATCGAAACTGCCCTATAAAATTCTACATGTTTATGTTCCACACAGCTAAACATAATCAACTATCACATGATGGCTTGGACAAATATGATGACAACTCAGTgaaatgtcatctttattatgATCGTTTGTGTGACGTGTCCAAATGGAAACTAACCTACCGTTCAAAAGGTCTTTGCTCTTTAAGCGCTAAGTGGGAGGTTACTATCCGAAGCTGTCTGAACACTTAATAGTCGGTTCAGAAGATCTCAGGCCTGGTGTACTTTTGGAACATGTgcataaaaaaaagtgtctaaTAAGTTTTAATGAGATACAGAGGCATAGGAAGTCTGGGCAAGCTTGGTCAAAATGACTGTTACTGTGAACAGTTACGCAAGTCCAAGAAGAAACGATAAAATCTccaaaaggcataaagttaaataagaaacacacaaaaatttAACGTTGCACAAATATGGAACCCTAGGAGATTTGAGCACCCAGCTAACACCATAATTAGCATGTTAGGGTTATGGCTATTTTCACAATCATCGTTAGGAAAGACCAGGTGATGCACATCATCAAACCTGCAGCAGCCATGGGTTCTTCCAAGCAGCTGCATAGCACTCTGTAAAAGGAACTGCTAGAAGCCAACAAAGCAGGCGACGGCTATAAGGTTGCCATTTCCTGGAAACCTGTGGTGGATTGTTCTACTGTTCAGCTTTACCTACACAAATATGGCCTTCACGGAAGAGTCACCAGAAGTAAAGCTCCTCTGCATCCTCACCGCAAAAGTCATCATCAGACGTTTGCAGAAGAACAAGGTGGAGGAAATTAAAAGTTGTACCATGGCCATCACAGAATATTAGTGAAAATCTGTGCACCTTAAAGGAGTACTCTGGTAAAAATGATGTATGAAAACGtgataaaaataattatctttGTCAAATAGCCCCCCTCTGCTCTCCCACAGCTGTCTGAAatgcaACACTCCGTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107829 True 1320 lncRNA 0.39 2 12581800 12667992

Neighbor

gene id symbol gene type direction distance location
LOC103045432 NA coding upstream 2568 12565112 ~ 12579232 (+)
exo1 LOC107744706,LOC107081139 coding upstream 32710 12533857 ~ 12549090 (+)
jade1 jade1 coding upstream 243425 12315094 ~ 12338375 (+)
LOC103034755 asmt2,LOC108438736,LOC108270049,LOC107654826,LOC105908292,LOC106611414,LOC107721495,LOC107668509 coding upstream 268862 12290397 ~ 12312938 (+)
LOC103024200 LOC108438733 coding upstream 320563 12188758 ~ 12261237 (+)
LOC103046040 NA coding downstream 73367 12741359 ~ 12748024 (+)
LOC103025054 slc16a12,LOC107669179,LOC107753457,LOC107758438 coding downstream 141675 12809667 ~ 12820803 (+)
LOC103047786 NA coding downstream 303439 12971431 ~ 12986601 (+)
LOC103021501 NA coding downstream 321739 12989731 ~ 13021102 (+)
morn2 morn2 coding downstream 387940 13055932 ~ 13062962 (+)
G80024 NA non-coding upstream 39151 12513002 ~ 12542649 (+)
G80028 NA non-coding upstream 49951 12528626 ~ 12531849 (+)
G80026 yipf4,LOC106576945 non-coding upstream 58700 12522704 ~ 12523100 (+)
G79924 NA non-coding upstream 298219 12281845 ~ 12283581 (+)
G79914 NA non-coding upstream 420020 12156315 ~ 12161780 (+)
G80114 NA non-coding downstream 153966 12821958 ~ 12823957 (+)
G80138 pten,ptena,LOC104929647,LOC108411875,LOC107670848,LOC103360879,LOC103387686 non-coding downstream 207781 12875773 ~ 12886581 (+)
G80166 LOC103025372 non-coding downstream 287324 12955316 ~ 12957340 (+)
G80176 NA non-coding downstream 319471 12987463 ~ 12987842 (+)
G80186 NA non-coding downstream 381803 13049795 ~ 13051000 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 302294 12223277 ~ 12279506 (+)
G79761 LOC108438749 other upstream 505589 12064844 ~ 12076211 (+)
G79717 NA other upstream 676415 11901095 ~ 11905385 (+)
G79654 NA other upstream 1026661 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 1766886 10801357 ~ 10814914 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 1053909 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 1257877 13925869 ~ 13952198 (+)
LOC103028846 LOC108431654 other downstream 1845418 14513410 ~ 14534923 (+)
G80648 NA other downstream 2057935 14725927 ~ 14728799 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 2062516 14730508 ~ 14798604 (+)

Expression


Co-expression Network