G80114


Basic Information

Item Value
gene id G80114
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12821958 ~ 12823957 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU107928
GCTCCATTCAACTTTACAAGcattgtttatattaaacaagaAGCAATAGTAATcttacattaaaatgaaaagttaAATAGAcgcacaataaacaataaacataaacaataaacagaaagaacGAGGGTGCACAAGCATGTTAGTTTTCACTGCTGAGAAGTCCTGGACACacccaggtagctgcactgttaaaatagcaatctgccaaattcagagcacacctggttttaaaagcattttatgcccgaaacacacccatgattaattaagagaattagtacatgccttttgtgcatttcgggCCACGCAATGTGTCCTTTTCCAGtagttatgatagcaaagacacactgacacgccctaaatcaagctaaaatcactaaaataaagcCCCTGATCTGCTTTATTTTAACAgagtataaaacattaaaaagtgaaCCCAAAAGATAAACATTTGAAGCACATAACCCCAAACCTATAGCGAAATTGTAATTCTGAAGCAAAAAAGACCATgcagatcagccataacattaaaacctccTGCATAATACTTTTCAGTTCACCTTTTTCTGCTCAAACCACTTTTACCCACAAAGCTGGCAATAAATGCCAAACTGGCAAGCCTTCAAAACCCATTCTGATCAATAAGCATTCACAACCCATTTgcttttacatttactcaacCACAATTATGGATGAGCATGCAGATATGTGTACATACCTATGTACCTATACATATaggtatctgtctgtctgtctatcattTCTTGCAATTAAGGGGCATCCATATACATATTCTGTATAAACAAGcaagtaaatatatacatacaaaaaagTGAAACAAATCTTTATTACAGCTAAAATGgctctattttttatattcgaCAGATTTGTTTCTGTGTGAACATGTGAACAGCAAACCCACACTGTGTCCACATTTTTAAGATATGTCTCTAAAATCTGATACATATTTGTAAAACAAATCAAAGGAACAGAAGTGGGGCTTTTGGTGGCTTGGAAGACCATGGCACTGACACTATTGCCTGAAGACCACAAACTTGAATCCCAAAgctgctttgccatcagcagctggagcctgagagagcacaattaattGCCCCATGCCctctccaggtgggtagatggcacagAGATAATTGACTCGGCTAAACTTGGAAAacattgggttttaaaaaataaggaGTGAGGAAAAGTTGATGGAGCCTCACATCCACTTCTACAAAATTCTCCCTATTACCAAGTAAGGCAGTGCTTTCCCaaatgaggtagtgcagtttgTTTTGAATGAAAAGGCAATGGACATTCTTCCCCAGACACTGACACAGAAAACCTTTGATAATGAGGCCTGGTTCTTGTAGCATCCCATATTTTCATATctagcagagtctggaggtgacaggctgctctccagtatcaacaacgcCATATTCATCTGATTTCCAATTCTGTTTTGGCTGCACTGGATCTTCCTCTGAATGTACCGaactcaaaatatattttttcatccaGGGCATATTTAAAATTTATGTAGTAATATCAAACAATATCTTTagagtattttaatatttctgcATGAACTCTACAGATTTCTGCATAAACTCTAcagattttaatttttcattctttcattgCTCCACGTTTTTTAGGTGTTCTTCAACAATCCGTTTCACCTCAGTGGCTTTTACCTTGTAACCTTTTTGTTTGAGATTTTTGACAAGTTCACTGTAGGCTTTTGATAATCCACGTTTCTCGTGCCATATCCTCAGGAGTTGTTCGGTCTGCTCCTCTGTATTTTTAGGGTAGTCACCCTGTACATTCTCAATGTCAACGGAAGTCACCAAAGGTTGGGTCACTTCCTTTACTACTCGCCAGCCCAGTTTTTTAGAGATGTCCGACAGCACAGGTGTTAAATCCACATC

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko05217 Basal cell carcinoma

RNA

RNA id representative length rna type GC content exon number start site end site
TU107928 True 1937 lncRNA 0.38 2 12821958 12823957

Neighbor

gene id symbol gene type direction distance location
LOC103025054 slc16a12,LOC107669179,LOC107753457,LOC107758438 coding upstream 1155 12809667 ~ 12820803 (+)
LOC103046040 NA coding upstream 73934 12741359 ~ 12748024 (+)
LOC103045432 NA coding upstream 242726 12565112 ~ 12579232 (+)
exo1 LOC107744706,LOC107081139 coding upstream 272868 12533857 ~ 12549090 (+)
jade1 jade1 coding upstream 483583 12315094 ~ 12338375 (+)
LOC103047786 NA coding downstream 147474 12971431 ~ 12986601 (+)
LOC103021501 NA coding downstream 165774 12989731 ~ 13021102 (+)
morn2 morn2 coding downstream 231975 13055932 ~ 13062962 (+)
arhgef33 arhgef33 coding downstream 241985 13065942 ~ 13084209 (+)
ecd NA coding downstream 327292 13151249 ~ 13163591 (+)
G80031 NA non-coding upstream 153966 12581800 ~ 12667992 (+)
G80024 NA non-coding upstream 279309 12513002 ~ 12542649 (+)
G80028 NA non-coding upstream 290109 12528626 ~ 12531849 (+)
G80026 yipf4,LOC106576945 non-coding upstream 298858 12522704 ~ 12523100 (+)
G79924 NA non-coding upstream 538377 12281845 ~ 12283581 (+)
G80138 pten,ptena,LOC104929647,LOC108411875,LOC107670848,LOC103360879,LOC103387686 non-coding downstream 51816 12875773 ~ 12886581 (+)
G80166 LOC103025372 non-coding downstream 131359 12955316 ~ 12957340 (+)
G80176 NA non-coding downstream 163506 12987463 ~ 12987842 (+)
G80186 NA non-coding downstream 225838 13049795 ~ 13051000 (+)
G80189 NA non-coding downstream 266988 13090945 ~ 13094064 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 542452 12223277 ~ 12279506 (+)
G79761 LOC108438749 other upstream 745747 12064844 ~ 12076211 (+)
G79717 NA other upstream 916573 11901095 ~ 11905385 (+)
G79654 NA other upstream 1266819 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 2007044 10801357 ~ 10814914 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 897944 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 1101912 13925869 ~ 13952198 (+)
LOC103028846 LOC108431654 other downstream 1689453 14513410 ~ 14534923 (+)
G80648 NA other downstream 1901970 14725927 ~ 14728799 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 1906551 14730508 ~ 14798604 (+)

Expression


Co-expression Network