Item | Value |
---|---|
gene id | G80138 |
gene name | pten,ptena,LOC104929647,LOC108411875,LOC107670848,LOC103360879,LOC103387686 |
gene type | non-coding |
species | mexican tetra (Astyanax mexicanus) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_035905.1 |
NCBI id | CM008308.1 |
chromosome length | 42966623 |
location | 12875773 ~ 12886581 (+) |
genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
symbol | description |
---|---|
ptena | Enables lipid phosphatase activity. Acts upstream of or within several processes, including lifelong otolith mineralization; negative regulation of angiogenesis; and phosphatidylinositol dephosphorylation. Predicted to be located in PML body and cytoplasm. Predicted to be active in several cellular components, including cytosol; nucleus; and plasma membrane. Is expressed in several structures, including nervous system; oocyte; otic vesicle; presumptive neural retina; and ventral wall of dorsal aorta. Human ortholog(s) of this gene implicated in several diseases, including Cowden syndrome; breast cancer (multiple); gastrointestinal system cancer (multiple); nervous system cancer (multiple); and reproductive organ cancer (multiple). Orthologous to human PTEN (phosphatase and tensin homolog). |
pten | Enables several functions, including PDZ domain binding activity; anaphase-promoting complex binding activity; and phosphatase activity. Involved in several processes, including dephosphorylation; negative regulation of cell migration; and regulation of cellular protein metabolic process. Acts upstream of or within negative regulation of protein kinase B signaling. Located in several cellular components, including apical plasma membrane; cytoplasmic side of plasma membrane; and nucleoplasm. Implicated in several diseases, including Cowden syndrome; PTEN hamartoma tumor syndrome; breast cancer (multiple); nervous system cancer (multiple); and reproductive organ cancer (multiple). Biomarker of several diseases, including PTEN hamartoma tumor syndrome; gastrointestinal system cancer (multiple); in situ carcinoma (multiple); reproductive organ cancer (multiple); and urinary system cancer (multiple). |
description |
---|
PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like isoform X1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU107960 | False | 645 | lncRNA | 0.50 | 2 | 12884554 | 12886581 |
TU107962 | False | 892 | lncRNA | 0.48 | 2 | 12875773 | 12879257 |
TU107964 | True | 1022 | lncRNA | 0.52 | 5 | 12875773 | 12886581 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC103025054 | slc16a12,LOC107669179,LOC107753457,LOC107758438 | coding | upstream | 54970 | 12809667 ~ 12820803 (+) |
LOC103046040 | NA | coding | upstream | 127749 | 12741359 ~ 12748024 (+) |
LOC103045432 | NA | coding | upstream | 296541 | 12565112 ~ 12579232 (+) |
exo1 | LOC107744706,LOC107081139 | coding | upstream | 326683 | 12533857 ~ 12549090 (+) |
jade1 | jade1 | coding | upstream | 537398 | 12315094 ~ 12338375 (+) |
LOC103047786 | NA | coding | downstream | 84850 | 12971431 ~ 12986601 (+) |
LOC103021501 | NA | coding | downstream | 103150 | 12989731 ~ 13021102 (+) |
morn2 | morn2 | coding | downstream | 169351 | 13055932 ~ 13062962 (+) |
arhgef33 | arhgef33 | coding | downstream | 179361 | 13065942 ~ 13084209 (+) |
ecd | NA | coding | downstream | 264668 | 13151249 ~ 13163591 (+) |
G80114 | NA | non-coding | upstream | 51816 | 12821958 ~ 12823957 (+) |
G80031 | NA | non-coding | upstream | 207781 | 12581800 ~ 12667992 (+) |
G80024 | NA | non-coding | upstream | 333124 | 12513002 ~ 12542649 (+) |
G80028 | NA | non-coding | upstream | 343924 | 12528626 ~ 12531849 (+) |
G80026 | yipf4,LOC106576945 | non-coding | upstream | 352673 | 12522704 ~ 12523100 (+) |
G80166 | LOC103025372 | non-coding | downstream | 68735 | 12955316 ~ 12957340 (+) |
G80176 | NA | non-coding | downstream | 100882 | 12987463 ~ 12987842 (+) |
G80186 | NA | non-coding | downstream | 163214 | 13049795 ~ 13051000 (+) |
G80189 | NA | non-coding | downstream | 204364 | 13090945 ~ 13094064 (+) |
G80197 | map4k3,map4k3a | non-coding | downstream | 235781 | 13122362 ~ 13124594 (+) |
LOC103044397 | pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 | other | upstream | 596267 | 12223277 ~ 12279506 (+) |
G79761 | LOC108438749 | other | upstream | 799562 | 12064844 ~ 12076211 (+) |
G79717 | NA | other | upstream | 970388 | 11901095 ~ 11905385 (+) |
G79654 | NA | other | upstream | 1320634 | 11554682 ~ 11555139 (+) |
fam98a | fam98a,LOC107583540,LOC107744493,LOC107670808 | other | upstream | 2060859 | 10801357 ~ 10814914 (+) |
LOC103027475 | fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 | other | downstream | 835320 | 13721901 ~ 13807027 (+) |
LOC103026193 | reep3,LOC108431646,LOC105906120,LOC102789435 | other | downstream | 1039288 | 13925869 ~ 13952198 (+) |
LOC103028846 | LOC108431654 | other | downstream | 1626829 | 14513410 ~ 14534923 (+) |
G80648 | NA | other | downstream | 1839346 | 14725927 ~ 14728799 (+) |
LOC103029370 | pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 | other | downstream | 1843927 | 14730508 ~ 14798604 (+) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | CI01000313_01019710_01027993 | PTEN, PTENA | coding | CI01000313 | null | 1019573 ~ 1027993 (-) |