G80138 (pten,ptena,LOC104929647,LOC108411875,LOC107670848,LOC103360879,LOC103387686)



Basic Information


Item Value
gene id G80138
gene name pten,ptena,LOC104929647,LOC108411875,LOC107670848,LOC103360879,LOC103387686
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12875773 ~ 12886581 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU107960
tgGTCATAATCAACCCAACTGAGTTGCATAAGATAAATCTACATTATGTATATCtcaacccccctccccccttacAGAGGAACTGTCCATCAACTGTAATCAACTGACCAAACAGCATCGCCTTTTCAACTCAGAAGCAGAAGCTCCGCTCTCATGTGGAAGTGGAAAGGGGAAGTGTTGAGGGGCTGAACTGGGACTGGGCCAGAAGCCTCTCTTTCACTACAACACACAGACTATAGGAATATTTCCGATTAACTTAGACTTACTGCAAGTGCCCCCACTGAACATAGGGAGGGTCTCAAATACCATCTTGTGGAAGAGCAAGGCAACAGGCTTATACTCCAACTGGTTCTTCAGCAGGTGGCTGTAGTAATAGACATACCTGCGTTGGCTGGGGATCGTCACGCCCTTCTTATCCCTGGTCCTCACTTCACCATAGAAATCCAGAGCTTCCTGCGCCTCCATAAACTTCTGACGATGCAACAAGTAGGCACAGATCATGACCCCGGTACGACCTTTGCCAGCCTTGCAGTGGATGGCCGCCACATGGTTCTCGTCCTCGGACAGCCACTGGTCGAGGTCCTCGCAGAAGGGCTTAATCAGCTCCAGCTGAGGGGGGTTGTGGTCTTCAAAAGGGTACTGTGC
>TU107962
TTCaattagtgtgaaaaaaagctCAGTTATCTGAGTGTCCTCACCTTAAAGTTCGGGGAGAAGTATCTGTTTGCTTtgtctttatttgctttatCAAGATCATTTTTTGTCAGAGTTAGAATCAAGTAGTCCCGGTCTGCGTCCGGTGCTCCGGCTGGCTCTCCTGCCCGTTCCCGCTCTCCTCCACcacttcctcctcctccaccaccactaCCGATGCTACTGCCACTGccgccgcctcctcctcctcctgccccCATCCCTCTCTCCCGCTCTGTCGGAGAACTCTGACTCTGTGAGGAATTGCTGTCTATGTCGTTTACCACAGACCCGTTCTCCCATTTCTCCGGGCTCTCCTCCGGACCCGGGATGAAGAAGGTATTTACCCAAAAATGGAACATTTTGTCCTTCTtcatcattttgttttgtttatgaaagAACTCCACTTTGATGTCTCCACAGACGGGCAGAGGCTGCGGGAACTCGAAGAACATGTGCTTGTCTTCCCTCCGCGTGTGGGACGGGTTCGACGTGTGGATCtttacttttaactggtacACGACAAACTGAGGGTCTGAGGAGACATTGAGAAAAGGATGAAAGGAAGAACAACAAATCTGGAGGCATAAAGAAAAGAACATTTAAGTGAAAACAAAAGGAgaagggattttttttaaaggcgaGAACGTGAAAAGTAAAGAAGTAAGAGCGAAGTAATTACTGGAGTAAATCGCTTCTGATAAAACCAAGAGAGACATAAAGCCCCGCCCCTACTTCTGACATCAGCAGAAGTGACAGAATGGTCATAAGAAATGGGGCGgtacagagggagagaaagctCAGCCCATCCCCCACTCGCCCCTCACCCAGAGCATGCAGCACAGTCAGTCAG
>TU107964
TTCaattagtgtgaaaaaaagctCAGTTATCTGAGTGTCCTCACCTTAAAGTTCGGGGAGAAGTATCTGTTTGCTTtgtctttatttgctttatCAAGATCATTTTTTGTCAGAGTTAGAATCAAGTAGTCCCGGTCTGCGTCCGGTGCTCCGGCTGGCTCTCCTGCCCGTTCCCGCTCTCCTCCACcacttcctcctcctccaccaccactaCCGATGCTACTGCCACTGccgccgcctcctcctcctcctgccccCATCCCTCTCTCCCGCTCTGTCGGAGAACTCTGACTCTGTGAGGAATTGCTGTCTATGTCGTTTACCACAGACCCGTTCTCCCATTTCTCCGGGCTCTCCTCCGGACCCGGGATGAAGAAGGTATTTACCCAAAAATGGAACATTTTGTCCTTCTtcatcattttgttttgtttatgaaagAACTCCACTTTGATGTCTCCACAGACGGGCAGAGGCTGCGGGAACTCGAAGAACATGTGCTTGTCTTCCCTCCGCGTGTGGGACGGGTTCGACGTGTGGATCtttacttttaactggtacACGACAAACTGAGGGTCCCAGTGCCAGTTTCCTTTCTTGAAGCCCTGGGGGTTCGCCTCACTCCTGTTTTTAACAGTACTGTCccTGCAAGTGCCCCCACTGAACATAGGGAGGGTCTCAAATACCATCTTGTGGAAGAGCAAGGCAACAGGCTTATACTCCAACTGGTTCTTCAGCAGGTGGCTGTAGTAATAGACATACCTGCGTTGGCTGGGGATCGTCACGCCCTTCTTATCCCTGGTCCTCACTTCACCATAGAAATCCAGAGCTTCCTGCGCCTCCATAAACTTCTGACGATGCAACAAGTAGGCACAGATCATGACCCCGGTACGACCTTTGCCAGCCTTGCAGTGGATGGCCGCCACATGGTTCTCGTCCTCGGACAGCCACTGGTCGAGGTCCTCGCAGAAGGGCTTAATCAGCTCCAGCTGAGGGGGGTTGTGGTCTTCAAAAGGGTACTGTGC

Function


symbol description
ptena Enables lipid phosphatase activity. Acts upstream of or within several processes, including lifelong otolith mineralization; negative regulation of angiogenesis; and phosphatidylinositol dephosphorylation. Predicted to be located in PML body and cytoplasm. Predicted to be active in several cellular components, including cytosol; nucleus; and plasma membrane. Is expressed in several structures, including nervous system; oocyte; otic vesicle; presumptive neural retina; and ventral wall of dorsal aorta. Human ortholog(s) of this gene implicated in several diseases, including Cowden syndrome; breast cancer (multiple); gastrointestinal system cancer (multiple); nervous system cancer (multiple); and reproductive organ cancer (multiple). Orthologous to human PTEN (phosphatase and tensin homolog).
pten Enables several functions, including PDZ domain binding activity; anaphase-promoting complex binding activity; and phosphatase activity. Involved in several processes, including dephosphorylation; negative regulation of cell migration; and regulation of cellular protein metabolic process. Acts upstream of or within negative regulation of protein kinase B signaling. Located in several cellular components, including apical plasma membrane; cytoplasmic side of plasma membrane; and nucleoplasm. Implicated in several diseases, including Cowden syndrome; PTEN hamartoma tumor syndrome; breast cancer (multiple); nervous system cancer (multiple); and reproductive organ cancer (multiple). Biomarker of several diseases, including PTEN hamartoma tumor syndrome; gastrointestinal system cancer (multiple); in situ carcinoma (multiple); reproductive organ cancer (multiple); and urinary system cancer (multiple).

NR:

description
PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like isoform X1

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU107960 False 645 lncRNA 0.50 2 12884554 12886581
TU107962 False 892 lncRNA 0.48 2 12875773 12879257
TU107964 True 1022 lncRNA 0.52 5 12875773 12886581
Loading

Neighbor


gene id symbol gene type direction distance location
LOC103025054 slc16a12,LOC107669179,LOC107753457,LOC107758438 coding upstream 54970 12809667 ~ 12820803 (+)
LOC103046040 NA coding upstream 127749 12741359 ~ 12748024 (+)
LOC103045432 NA coding upstream 296541 12565112 ~ 12579232 (+)
exo1 LOC107744706,LOC107081139 coding upstream 326683 12533857 ~ 12549090 (+)
jade1 jade1 coding upstream 537398 12315094 ~ 12338375 (+)
LOC103047786 NA coding downstream 84850 12971431 ~ 12986601 (+)
LOC103021501 NA coding downstream 103150 12989731 ~ 13021102 (+)
morn2 morn2 coding downstream 169351 13055932 ~ 13062962 (+)
arhgef33 arhgef33 coding downstream 179361 13065942 ~ 13084209 (+)
ecd NA coding downstream 264668 13151249 ~ 13163591 (+)
G80114 NA non-coding upstream 51816 12821958 ~ 12823957 (+)
G80031 NA non-coding upstream 207781 12581800 ~ 12667992 (+)
G80024 NA non-coding upstream 333124 12513002 ~ 12542649 (+)
G80028 NA non-coding upstream 343924 12528626 ~ 12531849 (+)
G80026 yipf4,LOC106576945 non-coding upstream 352673 12522704 ~ 12523100 (+)
G80166 LOC103025372 non-coding downstream 68735 12955316 ~ 12957340 (+)
G80176 NA non-coding downstream 100882 12987463 ~ 12987842 (+)
G80186 NA non-coding downstream 163214 13049795 ~ 13051000 (+)
G80189 NA non-coding downstream 204364 13090945 ~ 13094064 (+)
G80197 map4k3,map4k3a non-coding downstream 235781 13122362 ~ 13124594 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 596267 12223277 ~ 12279506 (+)
G79761 LOC108438749 other upstream 799562 12064844 ~ 12076211 (+)
G79717 NA other upstream 970388 11901095 ~ 11905385 (+)
G79654 NA other upstream 1320634 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 2060859 10801357 ~ 10814914 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 835320 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 1039288 13925869 ~ 13952198 (+)
LOC103028846 LOC108431654 other downstream 1626829 14513410 ~ 14534923 (+)
G80648 NA other downstream 1839346 14725927 ~ 14728799 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 1843927 14730508 ~ 14798604 (+)

Expression


G80138(pten,ptena,LOC104929647,LOC108411875,LOC107670848,LOC103360879,LOC103387686) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
End of interactive chart.

G80138(pten,ptena,LOC104929647,LOC108411875,LOC107670848,LOC103360879,LOC103387686) Expression in each Bioproject

Bar chart with 6 bars.
G80138(pten,ptena,LOC104929647,LOC108411875,LOC107670848,LOC103360879,LOC103387686) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.

Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000313_01019710_01027993 PTEN, PTENA coding CI01000313 null 1019573 ~ 1027993 (-)