G80176


Basic Information

Item Value
gene id G80176
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12987463 ~ 12987842 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU108011
taatgcaaaaaaaataaacaaatattattaaaaagattgaaacattttaaaaccctggaacatttaggagtaaaaataacaatgaagTAACgaagcagagactgtaaaaaaagatggacgctgtgtcgccattcccattcatttaatgaaaatgaagccaaaatcttccaccatgttggcgatcctgatacccgagtctgcgcagtagagaccagaggatcgagggagaaagactgtggagagacagcccactcatttaaataactccgcccctgagggctgcctcaaggtcacagacttttatttatgatttagttagaatgtaacattttaatttaaaatccgtcaatatattatttaacccaaGTACCGAAAAGGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108011 True 380 lncRNA 0.37 1 12987463 12987842

Neighbor

gene id symbol gene type direction distance location
LOC103047786 NA coding upstream 862 12971431 ~ 12986601 (+)
LOC103025054 slc16a12,LOC107669179,LOC107753457,LOC107758438 coding upstream 166660 12809667 ~ 12820803 (+)
LOC103046040 NA coding upstream 239439 12741359 ~ 12748024 (+)
LOC103045432 NA coding upstream 408231 12565112 ~ 12579232 (+)
exo1 LOC107744706,LOC107081139 coding upstream 438373 12533857 ~ 12549090 (+)
LOC103021501 NA coding downstream 1889 12989731 ~ 13021102 (+)
morn2 morn2 coding downstream 68090 13055932 ~ 13062962 (+)
arhgef33 arhgef33 coding downstream 78100 13065942 ~ 13084209 (+)
ecd NA coding downstream 163407 13151249 ~ 13163591 (+)
LOC103026899 p4ha1b,LOC108433345,LOC107671120,LOC108270445,LOC107668593,LOC107553883,LOC107750858 coding downstream 219606 13207448 ~ 13233703 (+)
G80166 LOC103025372 non-coding upstream 30123 12955316 ~ 12957340 (+)
G80138 pten,ptena,LOC104929647,LOC108411875,LOC107670848,LOC103360879,LOC103387686 non-coding upstream 100882 12875773 ~ 12886581 (+)
G80114 NA non-coding upstream 163506 12821958 ~ 12823957 (+)
G80031 NA non-coding upstream 319471 12581800 ~ 12667992 (+)
G80028 NA non-coding upstream 455614 12528626 ~ 12531849 (+)
G80186 NA non-coding downstream 61953 13049795 ~ 13051000 (+)
G80189 NA non-coding downstream 103103 13090945 ~ 13094064 (+)
G80197 map4k3,map4k3a non-coding downstream 134520 13122362 ~ 13124594 (+)
G80202 NA non-coding downstream 155243 13143085 ~ 13143493 (+)
G80205 NA non-coding downstream 158415 13146257 ~ 13147139 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 707957 12223277 ~ 12279506 (+)
G79761 LOC108438749 other upstream 911252 12064844 ~ 12076211 (+)
G79717 NA other upstream 1082078 11901095 ~ 11905385 (+)
G79654 NA other upstream 1432324 11554682 ~ 11555139 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 2172549 10801357 ~ 10814914 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 734059 13721901 ~ 13807027 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other downstream 938027 13925869 ~ 13952198 (+)
LOC103028846 LOC108431654 other downstream 1525568 14513410 ~ 14534923 (+)
G80648 NA other downstream 1738085 14725927 ~ 14728799 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 1742666 14730508 ~ 14798604 (+)

Expression


Co-expression Network