LOC103026193 (reep3,LOC108431646,LOC105906120,LOC102789435)


Basic Information

Item Value
gene id LOC103026193
gene name reep3,LOC108431646,LOC105906120,LOC102789435
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 13925869 ~ 13952198 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU108374
CTGAAAGCGAGAATGGAAAAGATGAGAGAGGAGCAGGGCGGTAATTTAGGCGCATATCTGTTATAAATCTTGCTCTGTTTCTGTGACAGTGccgtttaaatgtgtttaaccCGCTGGATGAGCAGCAGAAAGGTGTATTTTAGCCTCTAGCAGGACGGCTAAGGTTATTTGTGGCTGTGAAGAGGAGCTGCTGAAGTAACTGGACGGAGGAACAGGAGAGGAGAAAGATGGTTTCGTGGATCGTGTCTCGGGTTGTTGTCCTTGTGTTCGGGACACTCTATCCAGCGTACTACTCCTACAAAGCGGTCAGGACCAAGAATGTAAAAGAATACGTGCGATGGATGATGTATTGGATCGTGTTTGCTCTTTATACTGTAGTAGAGACCATCACAGACCTTTCCTTGGCATGGTTCCCGTTGTACTACGAGCTGAAAGTGGCTTTTGTTATCTGGCTGCTGTCGCCGTACACCCGAGGAGCCAGTCTGATATACAGAAAGTTCCTGCACCCCCTGCTGGCCTCCCGAGAACAGgagatAGATGATTACATCGTCCAGGCCAAAGAAAGAAGTTATGAGACGATGGTGAACTTCGGCAGGCAAGGCCTCACTAtcgctgctactgctgctgtcaCTGCTGCTGTtaagACTAACCACATGTAACGGTCTCTGTACCTGGCTAAAGGTGGTGGTGGAGCTGCAGGGACAGGGAGCCATTAGCGAGCGTCTGAGGAGCTTCAGTATTCCTGACATTTCACAGATCCCTTCTGACCAATCAGCTTTCGCTAGATCTCTCCAGCGGGCCAATCAGAGCACAGATCCCAGTATTGAGGGCTCAGAGTATTACCCATATCAGGAAGAGGACGGGCATGAAGAGGAAGTAGATGGAGCATTTTTAGAGGATGAATCATCTCTGCCTAAAGGTCTGCGCAGAACACAGAGCGTGAAGATCACCCGTTCCAAAGCTGTGCGCAAAGAGcCTCGTTACGGCTCGTTGAAGATTAAAACCAGAaggaggcccatgatcactacCAGCACTTTTGAACAGCCCTGATCAGCATCATAGAGGAGCCTCTGATTGGACAGCCTGCTCATCCTGTACCATCCTCTAGTGAAGCCTCCATTCCTACAGCCTCCATCATCCTGTAACACACTGGAGCTTGTTACAGTATGAACAGCCTTCATCATACCATAATACACACCACTGAAGTCTTTACACAAGCAGCCCCGGCTGTTCTGTTACAAGCACTAAAGAGCCTCGGGATGCTCTGGCCATCTTGTAACTATGTGCATTACAGGAGCCTCAACAGAAAAGAGTATCAACATTTGTCATCATGCTGTAATACACTGCTCTGCCTGAATCCGGCTTCCATGCTGTACCATCTTTGAGGGGAGCATTTGCACGCACAGTCTTGGTCATCATGTAGCAGAACCCAGGATGCTCTTGCTTTGGACTTGAACAGACCGGGTCATTTTGTAATGTTGTTGCATTCCAAACCAAGGAGGGGGCCTTCGCAACCAGCCTTAATTATATTgtaacacacgcacacacaagcTTCTGTATAACCAGCCCTGGCCATCCTGTTACACACCAGAAATGTCTCTGTATGAACAACCCTTGTCAACCTGTAACACATAGTACATCAGCCTCTCAATGAAAAGCCCTGGCCATCCTGTAACACATTCACTAGACCCTTTAGAGCTTTGATCAACCTTGGTCATCTTGTTACACATCATGGAAGCCTCTGAATGAGCAACGGCGGTCATCCTGTaatgcaaacacacactaaaatccTCTGTATGATGACCCTGGTAATCTGTAACATGCACATACACTCAAAAGACTCTGTATAATGAGCCTGGTAATCTGTGACATGCAAATGCACACTCAAAAGACTCTGTTTAATCAACCTTGGTCATCCTGTTCCACATCAGAGAAGCCTTTGTATGAACAACTGTGGTCATCCTGTAATGCAAACACGCACTAAAAGCCTCTGTATGATAACCCTGGTAATCTGTAACATGCACCTACACACTCAAAAGACTCTGTAGGATGACCCTAGTAATCTGTGGCATGAATACACACCCAAAAGGTAATAGCACTGTTCTGCCTGAACTCTGCTTCCAATCTGTACCATCCTTAAGAAGAGCATTTGTAAGCACCGTCTTGGTCATCATGTAGCAGAACCCAGGATGCTCATGCTTTGTATTTGAACAGATTGGGTCAGCCTGTTATGTTGTTGCATTCCAAACCAAGAAGGGGGCCTTTGCAACCAGCCTTTATCATCTTGTAACACGCACACACAAGTAATCTGTGGCATGAACACATACTCAAGACTCTGTTTGATGCCCCCTGGTAATCTGTAACATGCACACATACTCAAAAAACTTTGTATGATGACCACAGTAATCTGTAACATGCAGATCATAGAAGCCTCTGTATGAACAACTGTGGTCATCCTGTaatgcaaacacacactaaagGCCCCTGTATGATGCACCCTGGCAATCTGTAACATGCACACATACTCAAAAGGCTGTATGATGAtttatcagagaaCAGAACAGACATAGATACAGTGTCATCAAAAGCTATTTGCATACtaatagcactttttttttggagaatCTTTAGCCTGTAGCTGAATCTTAAACTGTGCCCTTATCACTGTTCCCTACATTCAAAAATACAGCGCTCAGCATTTTTCCTCAGAGAACTTGCACTGCCATGGTGGATTATGAGTGTTTCCTCATTCACCCAGTGTACACTATTTGTTCTTTACTAGAGATGTTACATTTGAGGAAATGGGTCACTGGTTGATATACAGTATGAATGGAAATTTATATATCCTAATGCTTAATATGGCATCTATTTCTGAGTATAATCCTACCATTCAACAAAAAGAGCAAGCTAGTTACCCAACCAACTATTCAGAAGGCTTTTTGTCGTATTttttcagtgatttaaaatatgttttggaaAGATAATTTAAAGtccctgaaaagaaaaaaatttgtactgaattttttgcactacaaggcacacttaaaatccttaatcctttattttcccaaaaatcgtcaattggccttataatccagtgtgccttataatccggtgctctttatgtatgaattctaccagtcaggttgtaaggagctgttaagccactccactgaagtaacTTTACAGAGAacttttcagtttagttcttcagcagcattagcattagccgctaaccgtgctaaagtcaagctctttggctgttcagaggtgagtattaAAGGCCTGTAGCTAACTCCAAATAGCACTGCtcgagcagcattagcattaactagtggttagccgctaatactaatgctaatgctccagcttcagtggaaatctggaagtATAggctaactgtaaataaactgaagcactttactgaccaaaatgaacagttttcaggagagaaatctgcatAGATTAACATACAGTGCTGGTTTGACGTgtcaaactttttatttatttattacagtattgcttacttagcttagctttacagataacaccacccagcagcaagacctgctgaattagaaggaaaacatggcaacactccTGTTCCTCACTATAGTCGCataaagtgtgccttataatctggtgcaccttatgaataataatataaaaacaaaacagaaaacagatgtttattgattttaatctgttgtgccttatagtgtgaaaaatacgatatttaggtttaaatacaaaacacaaagcAGAGATACACTATAATGCTTGTCTGAATTTTTGGGTTCAGTAATGTGAGGCTTGGATGAAACTGGCTCAGCCATAGAATCCCATTTCATGAAAATAGACGCTGCTTGATGGGAAATATTGTAGGATTGTTACAGTGTATCACTGCAGAATGGCCGGAGTCCCATAATAGTGCCCTATGTAGCGAATAGGGTAAAGTTTCAGTCACAGAAAGGAAGCAAGTGAGTTACAACAACTTCCACAAACCTAACCTGTAGCCTATAAATGGTTTGTATGATAGTGTAGATAAATACTACAGAATTACGACGACCCAAAGACTTTATGTGTCTTTATACGGTGTGTGTTTCAGACTTCATGGTCTTTGTTGTTCCATGCATTGTGATGTGAGTTAATATAACAGCTCATATCATATAAAACACTAATCAATAACTTGGGTTCAGTTAGGAAGGGGCCTGCTAACACACCAGCGCTGTTTTCTATTACTGATGCACTGTCAGCTAGCTTGAGCTTCTGGAAGACTGAGGGCTGAGGTCTGTTgggcaaatgtgtgtgtgactttgtgtgtgtgtgtgtgtatgagagagagaaatatagtgAGAATGAGGTTCTCTTGTGTCTCTtgtttacacattaaatattttctaagCCTTGTAATCTTTCAGCTTTATTTCCAGATCCTCTTTTCAACGTCTTACTCTAGTTTGTGGAAATTCCATCTCCAAATCTCCAAATCCACTCTTCTGCATGAATGTAGAGGCTGggttttaaaatatactaaatgcagtgtttttgctttgtgtgtgttttttttttttcattttcgtATGTAGCGTTTAATTGAATTcatcattaaat
>XM_007244602.3
AGAATGGAAAAGATGAGAGAGGAGCAGGGCGGTAATTTAGGCGCATATCTGTTATAAATCTTGCTCTGTTTCTGTGACAGTGccgtttaaatgtgtttaaccCGCTGGATGAGCAGCAGAAAGGTGTATTTTAGCCTCTAGCAGGACGGCTAAGGTTATTTGTGGCTGTGAAGAGGAGCTGCTGAAGTAACTGGACGGAGGAACAGGAGAGGAGAAAGATGGTTTCGTGGATCGTGTCTCGGGTTGTTGTCCTTGTGTTCGGGACACTCTATCCAGCGTACTACTCCTACAAAGCGGTCAGGACCAAGAATGTAAAAGAATACGTGCGATGGATGATGTATTGGATCGTGTTTGCTCTTTATACTGTAGTAGAGACCATCACAGACCTTTCCTTGGCATGGTTCCCGTTGTACTACGAGCTGAAAGTGGCTTTTGTTATCTGGCTGCTGTCGCCGTACACCCGAGGAGCCAGTCTGATATACAGAAAGTTCCTGCACCCCCTGCTGGCCTCCCGAGAACAGgagatAGATGATTACATCGTCCAGGCCAAAGAAAGAAGTTATGAGACGATGGTGAACTTCGGCAGGCAAGGCCTCACTAtcgctgctactgctgctgtcaCTGCTGCTGTtaagGGACAGGGAGCCATTAGCGAGCGTCTGAGGAGCTTCAGTATTCCTGACATTTCACAGATCCCTTCTGACCAATCAGCTTTCGCTAGATCTCTCCAGCGGGCCAATCAGAGCACAGATCCCAGTATTGAGGGCTCAGAGTATTACCCATATCAGGAAGAGGACGGGCATGAAGAGGAAGTAGATGGAGCATTTTTAGAGGATGAATCATCTCTGCCTAAAGGTCTGCGCAGAACACAGAGCGTGAAGATCACCCGTTCCAAAGCTGTGCGCAAAGAGcCTCGTTACGGCTCGTTGAAGATTAAAACCAGAaggaggcccatgatcactacCAGCACTTTTGAACAGCCCTGATCAGCATCATAGAGGAGCCTCTGATTGGACAGCCTGCTCATCCTGTACCATCCTCTAGTGAAGCCTCCATTCCTACAGCCTCCATCATCCTGTAACACACTGGAGCTTGTTACAGTATGAACAGCCTTCATCATACCATAATACACACCACTGAAGTCTTTACACAAGCAGCCCCGGCTGTTCTGTTACAAGCACTAAAGAGCCTCGGGATGCTCTGGCCATCTTGTAACTATGTGCATTACAGGAGCCTCAACAGAAAAGAGTATCAACATTTGTCATCATGCTGTAATACACTGCTCTGCCTGAATCCGGCTTCCATGCTGTACCATCTTTGAGGGGAGCATTTGCACGCACAGTCTTGGTCATCATGTAGCAGAACCCAGGATGCTCTTGCTTTGGACTTGAACAGACCGGGTCATTTTGTAATGTTGTTGCATTCCAAACCAAGGAGGGGGCCTTCGCAACCAGCCTTAATTATATTgtaacacacgcacacacaagcTTCTGTATAACCAGCCCTGGCCATCCTGTTACACACCAGAAATGTCTCTGTATGAACAACCCTTGTCAACCTGTAACACATAGTACATCAGCCTCTCAATGAAAAGCCCTGGCCATCCTGTAACACATTCACTAGACCCTTTAGAGCTTTGATCAACCTTGGTCATCTTGTTACACATCATGGAAGCCTCTGAATGAGCAACGGCGGTCATCCTGTaatgcaaacacacactaaaatccTCTGTATGATGACCCTGGTAATCTGTAACATGCACATACACTCAAAAGACTCTGTATAATGAGCCTGGTAATCTGTGACATGCAAATGCACACTCAAAAGACTCTGTTTAATCAACCTTGGTCATCCTGTTCCACATCAGAGAAGCCTTTGTATGAACAACTGTGGTCATCCTGTAATGCAAACACGCACTAAAAGCCTCTGTATGATAACCCTGGTAATCTGTAACATGCACCTACACAC

Function

symbol description
reep3 Predicted to enable microtubule binding activity. Involved in mitotic nuclear membrane reassembly. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic microtubule; endoplasmic reticulum membrane; and endoplasmic reticulum tubular network.

NR:

description
PREDICTED: receptor expression-enhancing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108374 True 4614 TUCP 0.42 11 13925869 13952198
XM_007244602.3 False 1968 mRNA 0.47 8 13925878 13947320

Neighbor

gene id symbol gene type direction distance location
LOC103026792 LOC108431631,LOC108270417,LOC107668606,LOC107750856,LOC107717089,LOC107579247 coding upstream 206251 13484566 ~ 13719618 (+)
LOC103027186 LOC108433299 coding upstream 528225 13274588 ~ 13397644 (+)
LOC103024106 actn2b,LOC103024106,LOC108433346,LOC108270464,LOC107552853,LOC107668621,LOC107084685 coding upstream 657037 13237205 ~ 13268832 (+)
LOC103026899 p4ha1b,LOC108433345,LOC107671120,LOC108270445,LOC107668593,LOC107553883,LOC107750858 coding upstream 692166 13207448 ~ 13233703 (+)
ecd NA coding upstream 762278 13151249 ~ 13163591 (+)
zmpste24 zmpste24,LOC107654896,LOC107583569,LOC107715979,LOC107670834,LOC107583239 coding downstream 138258 14090456 ~ 14102426 (+)
LOC103025466 LOC103025466,LOC107715944,LOC107654832,LOC107577051,LOC107736670,LOC101076253 coding downstream 155421 14107619 ~ 14110827 (+)
rpl13a rpl13a,LOC106610677,LOC107654893 coding downstream 161868 14114066 ~ 14117650 (+)
htr1d htr1d,LOC108269542,LOC107719539,LOC107590957,LOC107583484 coding downstream 337050 14289248 ~ 14361236 (+)
LOC103027082 ccdc6a,ccdc6,LOC108431652,LOC105910584,LOC107717103,LOC107663299,LOC107671115 coding downstream 498923 14451121 ~ 14478899 (+)
G80388 NA non-coding upstream 188769 13687025 ~ 13737100 (+)
G80386 NA non-coding upstream 264074 13661400 ~ 13661795 (+)
G80359 NA non-coding upstream 435655 13463375 ~ 13490214 (+)
G80319 NA non-coding upstream 558778 13366572 ~ 13367091 (+)
G80227 NA non-coding upstream 652810 13272806 ~ 13273059 (+)
G80494 NA non-coding downstream 93181 14045379 ~ 14046945 (+)
G80500 NA non-coding downstream 105223 14057421 ~ 14063596 (+)
G80578 NA non-coding downstream 621384 14573582 ~ 14574902 (+)
G80580 NA non-coding downstream 625126 14577324 ~ 14579064 (+)
G80588 bicc1,LOC108431656 non-coding downstream 640901 14593099 ~ 14607530 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other upstream 118842 13721901 ~ 13807027 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 1646363 12223277 ~ 12279506 (+)
G79761 LOC108438749 other upstream 1849658 12064844 ~ 12076211 (+)
G79717 NA other upstream 2020484 11901095 ~ 11905385 (+)
G79654 NA other upstream 2370730 11554682 ~ 11555139 (+)
LOC103028846 LOC108431654 other downstream 561212 14513410 ~ 14534923 (+)
G80648 NA other downstream 773729 14725927 ~ 14728799 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 778310 14730508 ~ 14798604 (+)
LOC111193140 NA other downstream 836404 14788602 ~ 14803032 (+)
LOC111188193 LOC108431664 other downstream 854117 14806315 ~ 14835079 (+)

Expression


Co-expression Network