G80494


Basic Information

Item Value
gene id G80494
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 14045379 ~ 14046945 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU108419
TTAATATTAGtccattattaatatatacagtcaCTATAAATTGTCTTTATTATCAGTTCTACTTATACACTAAAGTACAATGTCTCAGCAGTAAAGAGAAGAAATAAAGGTCTGACAAATGAAGTGCAGTGATAAACTCCGTGCTGAGATGAGAAATAAACAGCAGGTTTTCTGGCCATACAACATTGTTGGGGGGCCCGGTCTCAGTTTTACAGTTGAAAAATATCCCATGTCCAGTGTGTACCTTATGACGGTGGGGTAGAGCTCTGAGGTGTAAACATAAACAATGTTAAAGGCAGCGCTGACCATCAGCTTTCCCAGCAGAGCCAGAGAGCTTCCACTCGCCCAGGAGCCTGTGGGGAGAGACAGacacacagactgTTATCATAACCTCTGTCAATAGTTAAAATAAGAAGccacttaaaaaagatgagtttatttaattttaccatctttgaaaacctctggaggaagagggatgatcacaagccatcatgccaagctgaactgcttgaatttttgcaccaggagtgacacagtaatccaaaagcagtgtgtaagactggtggaggagaactgtaTCTAGGCTGTTTCTTTACCTCACTGATGAGTCTTCAttgtgctcttggggtaattttgacTGGGCAGCCACTTTTTGGCACAGTAACCACAGTCCCAAATTGTCTCTATTTGTAAACTGTTTGCCCTAATGTAGACTGATGAATATCTAAAGTCTTTGAAATtactttttaaccttttccagCTATCTGTAAGTCAACAATATTTGATAGTAGAttctctgaaagctctttttggcGCAGCACGgcccacatacacacatccttcttaaaatgttttttcttcagtcAGATTAGCTCTAATCCACACCTCCAAACTGACAATACTCTATGTATGCTAATTTAAGGTCATTAACACaagggtttacatactttttccactagcactataaggtgcatatGTTTGTTCTCAATGAAACACATTACATTTGTCAATACCCTTGATGTGGATGAAGAAAGtttgaaaaaacatgaaattccAAAGGGTCCTCTTTTTTTTGGCCACTGTATTAAGAGTAAAATAGCACATCATCTCCTTACCTGACTGAACAGGTAGAAACATGGAGATAAGACAACACAACCCTGCCAGAATGAGAAAACTGGCTAATGACTTCCTTCTCCCTGCcctgagaaagagagggaaacaaACAGTTAAACCAGCACGTGTTCAGAATAATCTACACAGTGGAGCATTCAAATAGTTCCCACATTTAAATCTTATACATGTTCAGGTCTGTGAATCATCCCAGTTTCCTGGAGAGTACTCACCTGTACTCATCTGGCTTTATAGTTGGAGCCGTTTAACCCTCAAATAACTGTAAACTTCACAGTCAAATCAGAAACTTATGGCcacaacatatatatttagctcGATTAATCATATAGTACACTTTGGAGatgtataataattacagactgtagtcctgtacctgtttttctgtatactttattatttactgttcttca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108419 True 1544 lncRNA 0.39 2 14045379 14046945

Neighbor

gene id symbol gene type direction distance location
LOC103026792 LOC108431631,LOC108270417,LOC107668606,LOC107750856,LOC107717089,LOC107579247 coding upstream 325761 13484566 ~ 13719618 (+)
LOC103027186 LOC108433299 coding upstream 647735 13274588 ~ 13397644 (+)
LOC103024106 actn2b,LOC103024106,LOC108433346,LOC108270464,LOC107552853,LOC107668621,LOC107084685 coding upstream 776547 13237205 ~ 13268832 (+)
LOC103026899 p4ha1b,LOC108433345,LOC107671120,LOC108270445,LOC107668593,LOC107553883,LOC107750858 coding upstream 811676 13207448 ~ 13233703 (+)
ecd NA coding upstream 881788 13151249 ~ 13163591 (+)
zmpste24 zmpste24,LOC107654896,LOC107583569,LOC107715979,LOC107670834,LOC107583239 coding downstream 43511 14090456 ~ 14102426 (+)
LOC103025466 LOC103025466,LOC107715944,LOC107654832,LOC107577051,LOC107736670,LOC101076253 coding downstream 60674 14107619 ~ 14110827 (+)
rpl13a rpl13a,LOC106610677,LOC107654893 coding downstream 67121 14114066 ~ 14117650 (+)
htr1d htr1d,LOC108269542,LOC107719539,LOC107590957,LOC107583484 coding downstream 242303 14289248 ~ 14361236 (+)
LOC103027082 ccdc6a,ccdc6,LOC108431652,LOC105910584,LOC107717103,LOC107663299,LOC107671115 coding downstream 404176 14451121 ~ 14478899 (+)
G80388 NA non-coding upstream 308279 13687025 ~ 13737100 (+)
G80386 NA non-coding upstream 383584 13661400 ~ 13661795 (+)
G80359 NA non-coding upstream 555165 13463375 ~ 13490214 (+)
G80319 NA non-coding upstream 678288 13366572 ~ 13367091 (+)
G80227 NA non-coding upstream 772320 13272806 ~ 13273059 (+)
G80500 NA non-coding downstream 10476 14057421 ~ 14063596 (+)
G80578 NA non-coding downstream 526637 14573582 ~ 14574902 (+)
G80580 NA non-coding downstream 530379 14577324 ~ 14579064 (+)
G80588 bicc1,LOC108431656 non-coding downstream 546154 14593099 ~ 14607530 (+)
G80590 ube2d1a,LOC103029158,LOC108270474,LOC108431657,LOC107717106,LOC107553913,LOC107663272,LOC107733527,LOC105911631,LOC107583697 non-coding downstream 593172 14640117 ~ 14646367 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other upstream 93181 13925869 ~ 13952198 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other upstream 238352 13721901 ~ 13807027 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 1765873 12223277 ~ 12279506 (+)
G79761 LOC108438749 other upstream 1969168 12064844 ~ 12076211 (+)
G79717 NA other upstream 2139994 11901095 ~ 11905385 (+)
LOC103028846 LOC108431654 other downstream 466465 14513410 ~ 14534923 (+)
G80648 NA other downstream 678982 14725927 ~ 14728799 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 683563 14730508 ~ 14798604 (+)
LOC111193140 NA other downstream 741657 14788602 ~ 14803032 (+)
LOC111188193 LOC108431664 other downstream 759370 14806315 ~ 14835079 (+)

Expression


Co-expression Network