LOC103028846 (LOC108431654)


Basic Information

Item Value
gene id LOC103028846
gene name LOC108431654
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 14513410 ~ 14534923 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU108526
TAAACAGCAGCGGTGAGCTGCGCGTTCAGagctagcgctaatgctaacccCGCAGTCCGGCTGAGGAGCCGCGGTGCAGTTATGaatacagtgtattttattaattcagttAATCAAGAGTAAAATAAAGCGCTATTCTCCTCAGCAGAGCTAAAATTGGGGCCGCTGGTCGCGCTGTCACGCGGTAGATTAGCAGGCTaacctatgctaagctaagATAGCGctccagtagcagcagcagggcGGGCGGGCTGAGCCGCGGTGCGGGGTAATGGATTCTGCCCTCGGAGGAGATTAAAATGGGAGCAGGAGCTTCACTGTCGCTCTGTCAAAGTCAGTCATCAGTGAGGGTTCTGAAGCACAGTGCTCGTGTGGAGCCAGAGCCCCAGGCCCCAGATCCAGACCCCAGGGCAGTATTCGGTATCCCTCTGTCAAAGCTAAGGGAGGCAGGGAAGCTGCAGCATGGGGTACCAGTAGTGCTGAAAAACATGGTGGAGTTTCTGGAAAAGAACGGTGAGTGTGTTGGGGAAAGGTCTGTGTGATATCCacagttttt
>XM_022672476.1
ATACCGGACTGATATCCACATGGCGCATCTGTTACCATGACAACCATCTCTATGGAAACGGAACAGTAGTCACATGACTAGCAACATGTAAACAGCAGCGGTGAGCTGCGCGTTCAGagctagcgctaatgctaacccCGCAGTCCGGCTGAGGAGCCGCGGTGCAGTTATGaatacagtgtattttattaattcagttAATCAAGAGTAAAATAAAGCGCTATTCTCCTCAGCAGAGCTAAAATTGGGGCCGCTGGTCGCGCTGTCACGCGGTAGATTAGCAGGCTaacctatgctaagctaagATAGCGctccagtagcagcagcagggcGGGCGGGCTGAGCCGCGGTGCGGGGTAATGGATTCTGCCCTCGGAGGAGATTAAAATGGGAGCAGGAGCTTCACTGTCGCTCTGTCAAAGTCAGTCATCAGTGAGGGTTCTGAAGCACAGTGCTCGTGTGGAGCCAGAGCCCCAGGCCCCAGATCCAGACCCCAGGGCAGTATTCGGTATCCCTCTGTCAAAGCTAAGGGAGGCAGGGAAGCTGCAGCATGGGGTACCAGTAGTGCTGAAAAACATGGTGGAGTTTCTGGAAAAGAACGGTGAGTGTGTTGGGGAAAGtgtgtttgtatgttcAGACCATAAAGGCCGGGCGGAGCTGTTTGAGGCACTGAAAGAAACCCTGAATCGTCTCCCTGATGACAATTACAACATCCTGTCGTACCTCCTGCACTTCCTGTCCAGAGTGGCCGCCCACAGCCAGTGGAATCACATGACCTCAGAAAACTTGGCCACAGTGTTTGGGCCGTGCATTTTCCGagTCCCTGAGGGCCCCAAGATGCTGGAGGAACAGACGGTCTGCAATACCCTCACTCTGTATCTGTTGGAGAAACACAAACACCTGATGCCAAATACACACAGCGGGGACCTCACAATGCCACCTCCTCCTATAGCAGATATGGCACAGCTACACCAGgTCCAGTCTTGTAATCTGGGGGCTGTGTGTGACAGTAGCACGGATACAAGCCAACCTACTGATCACAGCAAGGACACAGACATGAAAGCTGACCTACTGACTGCAGTACAGACCCAAGCACTGAACAGCAGgtgtataaaaGTTCAGCCAAGAAGAGCTTCATGGAAAGAAGTGGTTTTAATGGCAGTGCAAAGTATCAGATGCAGTTGTGTAAAGCACGCCACCACTGGACACCGTAGAGCAGTGGAGACGTGTTCTCTGGACAATCACACACTCCCCTCCAACTCAGATGAATCAGAGGCGGAGAAAAGGACACAAGAAGAGGAGAGACAGACTGAAGAAGAGCCGCCATCTCCaaaccacaacaacaacaacaaacactcacacaccccgtacagcaacacacactcacagagtgGCGGTACATATTTAAAAGAGCAAACCAgcaacactacacactctagGACCAAAACAAAATACACCCGGAGCCACACATACACTCCAAACCGGGATACACACACCAAAACCAGCGACACACTTCCAGAGACCATTACCTCACACAGTCAGAGCAACAACACACACCCCCTATACAGCAGCACAGATTCCCAGAGCAGCGGTGGCACACACTCAGACACCAGCAACAGGACTGGACACACACACCCCAAGACCAGAGTGAAATACACCCGGAGCCACACATACACTCCAAACAGGAGTTCACACACCAAAACCACctgccacacacactccacatccAGCCACACACTCCCAGAGACCAGCAGCTCACACAGGCAGAGCcagcacacacactgcacatccAGCAACACACTCCCAGAGACCAGCAGCTCACACAAGCAgagccaccacacacactccacagagTCCAGCCACACACTCCCAGATACCAGCAGCTCACACAAGCAgagccaccacacacactccacagagTCCAGCCACACACTCCCAGATACCAGCAGCTCACACAAGCAgagccaccacacacactccacagagTCCAGCCACACACTCCCAGAGACCAGCAGCTCACACAGGCAgagccaccacacacactccacagagTCCAGCCACACCCTCCCAGAGACCAGCAGCTCACACAGGCCgagccaccacacacactccacagagTCCAGCAACACACTCCCAGATACCAGCAGCTCACACAGGCAGAgccagcacacacactccacagagTCCAGCCACACACTCCCAGATACCAGCAGCTCACACAGGCCgagccaccacacacactccacagagTCCAGCCACACACTCCCAGATACCAGCAGCTCACACAGGCCgagccaccacacacactccacagagTCCAGCCACACCCTCCCAGAGACCAGCAGCTCACACAAGCAgagccaccacacacactccacagagTCCAGCCACACCCTCCACAGAGTCCAGCAACACACTCCAGAGACCAGCAGCTCACACAAGCAgagccaccacacacactccacagagTCCAGCAACACACTCCCAGAGACCAGCAGCTCACACAGACAgagccaccacacacactccacagagTCCAGCCACACTCAAAATGTAGACACGCAGGAAAAAGGAGCCAGCCCACCGTCCTGCAGTGAACAGCCCACCTGTGACAGCAGGGctCCTATTTGGAGGCCTGTGGGTGCACTTCCCTCTCCTCACGCTCCAATCTTAAGTCAGAATCAGCACTTAAGCAGCGAGCAAGGCTCTGTCTCCTCCAGCCAGTCACAAGTTATgtctgaCTGTATTAGCAGTAAGAATAGTGCAGAAGATTCCACTGAGCCGTCCGTCTCTCTGCTGCAGCGCCGTATTCACAACCTCAAACAAGCAGTCAGGAGCTTGGATAACTCTTTCCAGTACACTCAGTACTACAAGGCTGGACGTAATGATAAGGTGGCTGATCCTAGAGTGGCGAGTCTAATGATGGACCTGGATAAAGCCCGTAAGCAGCTTACAGACCTACAATCGAGGCAGTGTGTGGACGGATCAGTAAAGCTCTGCAGTTCTTCTACTGTCCAGAAGGGGGTCAGCGTGACTAAACCTGCACTGGAGGACACAGTGAAAACACTAACGCAACACCTGAAAGAAAAACGACTGGAACTTAACCTGCCAGAGCGTTTACAGgaCATGTCTTTGGATCAGCTGGCTCTGGAGAAGATGACGCTGCAGAAGAGTCTGCTTTACTACGAGAGTCTTCATGGCAGACCGAGATCAAAAGAGGAGAGGAGTGTGATGAGAGATCTGTACGATCGCTATCATTTGGTAAAGCAGGCGTTCTACTCATCAAACAGACAGACCAATACGATGaGTGGGGATAAGGGCTTGGCTAAATTGATCCAGCAGACACTTTGTAGCACTTTGCCGACACAAGAGGCCAGTAATCCTGCCTTCATCTCACAGCTGGAGGAGATCAAACTGACAACAGCTCagacaaacaacacacactccatcaacaggGCTGAGATACTAATGCAACTGAAAGAAACCAGGGTAGAGAAGAGACGGCAGAGGAAGATTCTGAAAGAGTTTGAGGAGACGGTTCTCTTGAAGACTGGCAAGAGCGCACAGAGAGAGGACCGGGTTCCCATGGCGGCGGAATACGACCGCTACGAAACTCTGAAAGCCAGGCTAAAGTTGCTGAAAAGGATGCTGGGACAGACACACACTGTGAAAGCAGCCGGGTGAGCGAGGCTTTAGCCCCTGCCGTGCTGAAGACTGGAGCGTATTTGTTAACGGactgtaattttgtaattttgagaGATACAGTTTGTTGTCTGTGCAGCGCTGAAATATGAAAtcgtttataattatttatgaaAAATGTTATCAGTGGCAAATATGCAATCacgttgttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108526 False 556 lncRNA 0.53 2 14513498 14515824
XM_022672476.1 True 3854 mRNA 0.52 17 14513410 14534923

Neighbor

gene id symbol gene type direction distance location
LOC103027375 LOC108431653 coding upstream 2380 14495258 ~ 14511030 (+)
LOC103027082 ccdc6a,ccdc6,LOC108431652,LOC105910584,LOC107717103,LOC107663299,LOC107671115 coding upstream 34511 14451121 ~ 14478899 (+)
htr1d htr1d,LOC108269542,LOC107719539,LOC107590957,LOC107583484 coding upstream 152174 14289248 ~ 14361236 (+)
rpl13a rpl13a,LOC106610677,LOC107654893 coding upstream 395760 14114066 ~ 14117650 (+)
LOC103025466 LOC103025466,LOC107715944,LOC107654832,LOC107577051,LOC107736670,LOC101076253 coding upstream 402583 14107619 ~ 14110827 (+)
entpd6 entpd6 coding downstream 160670 14695593 ~ 14722677 (+)
LOC111193201 NA coding downstream 228647 14763570 ~ 14766023 (+)
LOC103032735 LOC103032735,LOC108431665,LOC108270066,LOC107715976,LOC107583272,LOC107720922,LOC107670885,LOC107583566,LOC107654900 coding downstream 301559 14836482 ~ 14879706 (+)
peli1 peli1,peli1b,LOC107715974,LOC107583279,LOC107654901,LOC107670869,LOC107583565 coding downstream 357504 14892427 ~ 14951079 (+)
wdpcp wdpcp coding downstream 489546 15024469 ~ 15152481 (+)
G80500 NA non-coding upstream 449814 14057421 ~ 14063596 (+)
G80494 NA non-coding upstream 466465 14045379 ~ 14046945 (+)
G80388 NA non-coding upstream 776310 13687025 ~ 13737100 (+)
G80386 NA non-coding upstream 851615 13661400 ~ 13661795 (+)
G80359 NA non-coding upstream 1023196 13463375 ~ 13490214 (+)
G80578 NA non-coding downstream 38659 14573582 ~ 14574902 (+)
G80580 NA non-coding downstream 42401 14577324 ~ 14579064 (+)
G80588 bicc1,LOC108431656 non-coding downstream 58176 14593099 ~ 14607530 (+)
G80590 ube2d1a,LOC103029158,LOC108270474,LOC108431657,LOC107717106,LOC107553913,LOC107663272,LOC107733527,LOC105911631,LOC107583697 non-coding downstream 105194 14640117 ~ 14646367 (+)
G80662 NA non-coding downstream 286832 14821755 ~ 14822248 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other upstream 561212 13925869 ~ 13952198 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other upstream 706383 13721901 ~ 13807027 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 2233904 12223277 ~ 12279506 (+)
G79761 LOC108438749 other upstream 2437199 12064844 ~ 12076211 (+)
G79717 NA other upstream 2608025 11901095 ~ 11905385 (+)
G80648 NA other downstream 191004 14725927 ~ 14728799 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 195585 14730508 ~ 14798604 (+)
LOC111193140 NA other downstream 253679 14788602 ~ 14803032 (+)
LOC111188193 LOC108431664 other downstream 271392 14806315 ~ 14835079 (+)
LOC111193203 NA other downstream 639612 15174535 ~ 15203787 (+)

Expression


Co-expression Network