G80590 (ube2d1a,LOC103029158,LOC108270474,LOC108431657,LOC107717106,LOC107553913,LOC107663272,LOC107733527,LOC105911631,LOC107583697)


Basic Information

Item Value
gene id G80590
gene name ube2d1a,LOC103029158,LOC108270474,LOC108431657,LOC107717106,LOC107553913,LOC107663272,LOC107733527,LOC105911631,LOC107583697
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 14640117 ~ 14646367 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU108553
TTGTCTTTGTCTGATTTGTAGGTGTGCGCTATGTCTGGAACTAAAGGGTCGTCTGGGTTTGGGTCACACAGTAGCGAGCATATGGATAACAACACTTTAGACACGGTGAGGGCAGGACTCCACTGTGAGCGCAGGATGTCTAGACAGATACTGCCGTTACTATTGATGTTAGGATGGTAGATTTTTGTTGTGAAGGCAACCTTAGGTGGTTTAAAGGGGTAGTCTGTAGGGAACTGTATAGTCAAGAAGAAAACACCACCCTGAAATGGACTGTCACCTGGTCCCATTATAGTAGCTTGCCagtgaaacaAATCCTCGCCCATTGGTCCCGCTGAACATTGTGAAGGAGGGTCTCGCTGCAAGTCCTGTAACTCCTTCTGAATCCTTTTCATAGCCATCACACTCTCCCACCAAtcacagcctctctctctctctctctctctctctctctctc

Function

symbol description
ube2d1a Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in protein K48-linked ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human UBE2D1 (ubiquitin conjugating enzyme E2 D1).

NR:

description
ubiquitin-conjugating enzyme E2 D4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108553 True 454 lncRNA 0.48 6 14640117 14646367

Neighbor

gene id symbol gene type direction distance location
LOC103027375 LOC108431653 coding upstream 129087 14495258 ~ 14511030 (+)
LOC103027082 ccdc6a,ccdc6,LOC108431652,LOC105910584,LOC107717103,LOC107663299,LOC107671115 coding upstream 161218 14451121 ~ 14478899 (+)
htr1d htr1d,LOC108269542,LOC107719539,LOC107590957,LOC107583484 coding upstream 278881 14289248 ~ 14361236 (+)
rpl13a rpl13a,LOC106610677,LOC107654893 coding upstream 522467 14114066 ~ 14117650 (+)
LOC103025466 LOC103025466,LOC107715944,LOC107654832,LOC107577051,LOC107736670,LOC101076253 coding upstream 529290 14107619 ~ 14110827 (+)
entpd6 entpd6 coding downstream 49226 14695593 ~ 14722677 (+)
LOC111193201 NA coding downstream 117203 14763570 ~ 14766023 (+)
LOC103032735 LOC103032735,LOC108431665,LOC108270066,LOC107715976,LOC107583272,LOC107720922,LOC107670885,LOC107583566,LOC107654900 coding downstream 190115 14836482 ~ 14879706 (+)
peli1 peli1,peli1b,LOC107715974,LOC107583279,LOC107654901,LOC107670869,LOC107583565 coding downstream 246060 14892427 ~ 14951079 (+)
wdpcp wdpcp coding downstream 378102 15024469 ~ 15152481 (+)
G80588 bicc1,LOC108431656 non-coding upstream 32587 14593099 ~ 14607530 (+)
G80580 NA non-coding upstream 61053 14577324 ~ 14579064 (+)
G80578 NA non-coding upstream 65215 14573582 ~ 14574902 (+)
G80500 NA non-coding upstream 576521 14057421 ~ 14063596 (+)
G80494 NA non-coding upstream 593172 14045379 ~ 14046945 (+)
G80662 NA non-coding downstream 175388 14821755 ~ 14822248 (+)
G80663 NA non-coding downstream 176509 14822876 ~ 14865363 (+)
LOC111193202 NA non-coding downstream 316866 14963233 ~ 14969945 (+)
G80674 NA non-coding downstream 317712 14964079 ~ 14964754 (+)
G80745 NA non-coding downstream 444825 15091192 ~ 15093209 (+)
LOC103028846 LOC108431654 other upstream 105194 14513410 ~ 14534923 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other upstream 687919 13925869 ~ 13952198 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other upstream 833090 13721901 ~ 13807027 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 2360611 12223277 ~ 12279506 (+)
G79761 LOC108438749 other upstream 2563906 12064844 ~ 12076211 (+)
G80648 NA other downstream 79560 14725927 ~ 14728799 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 84141 14730508 ~ 14798604 (+)
LOC111193140 NA other downstream 142235 14788602 ~ 14803032 (+)
LOC111188193 LOC108431664 other downstream 159948 14806315 ~ 14835079 (+)
LOC111193203 NA other downstream 528168 15174535 ~ 15203787 (+)

Expression


Co-expression Network