G80648


Basic Information

Item Value
gene id G80648
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 14725927 ~ 14728799 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU108641
tcttctttgtaTAAACTGTAATAAGAACTTATTTAAACAAGCTTTTTAACAATAGTTTTTAAATACATCTACACATCCCAACAGGCCTAAATTTCCATAAACAGAGAATGCATGTGTAACAGTTTTTACAAAATGTGGTTATTTGTTCCAAAAGACAACGAGAGTTCAGAGGAAGGCATCGCACCATTCGGTCAGACACTGCGAACAGGACGCAGCCTGCCGTGCATTAGCTCCACTAGTGTCCTTCAGCCACTCAGCAAACAGCTCCTGGTCCTTCCTCAACAGCAGGAACTGACCCAACACCACAAACGCTTATCAAAGCCCTGCTCCTCCAACTTCTTCCCCAGAACCTCTCCAATCCCAGACAGAGCTGTAACGGGCTTGTCCCCCATGGGTTCTGCCACAAAGTCTCTGTGTTTCTGGGAGGTGGTTGACATCTCAAGACGTCCTGTGACCAAAACCCTGAAGAGCTTGTTTCctgtttaatattgcaatgtCAGCGTGCAATTAAGGGTATCtctaatttaattcattttatcaGGCCTGTACACTCTGAACACGTTCACAAAACACCCTGGTGCTTCTTTCACACCTCCATATGCTTGACTGGAAACAACCCGGGCTAATTACTCCACCACTCTGACCACTTATTTCCTCCCCTAATAATCACGTGCTTTGTTTGGGTTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108641 True 689 TUCP 0.44 3 14725927 14728799

Neighbor

gene id symbol gene type direction distance location
entpd6 entpd6 coding upstream 3250 14695593 ~ 14722677 (+)
LOC103027375 LOC108431653 coding upstream 214897 14495258 ~ 14511030 (+)
LOC103027082 ccdc6a,ccdc6,LOC108431652,LOC105910584,LOC107717103,LOC107663299,LOC107671115 coding upstream 247028 14451121 ~ 14478899 (+)
htr1d htr1d,LOC108269542,LOC107719539,LOC107590957,LOC107583484 coding upstream 364691 14289248 ~ 14361236 (+)
rpl13a rpl13a,LOC106610677,LOC107654893 coding upstream 608277 14114066 ~ 14117650 (+)
LOC111193201 NA coding downstream 34771 14763570 ~ 14766023 (+)
LOC103032735 LOC103032735,LOC108431665,LOC108270066,LOC107715976,LOC107583272,LOC107720922,LOC107670885,LOC107583566,LOC107654900 coding downstream 107683 14836482 ~ 14879706 (+)
peli1 peli1,peli1b,LOC107715974,LOC107583279,LOC107654901,LOC107670869,LOC107583565 coding downstream 163628 14892427 ~ 14951079 (+)
wdpcp wdpcp coding downstream 295670 15024469 ~ 15152481 (+)
LOC111193204 NA coding downstream 778581 15507380 ~ 15542286 (+)
G80590 ube2d1a,LOC103029158,LOC108270474,LOC108431657,LOC107717106,LOC107553913,LOC107663272,LOC107733527,LOC105911631,LOC107583697 non-coding upstream 79560 14640117 ~ 14646367 (+)
G80588 bicc1,LOC108431656 non-coding upstream 118397 14593099 ~ 14607530 (+)
G80580 NA non-coding upstream 146863 14577324 ~ 14579064 (+)
G80578 NA non-coding upstream 151025 14573582 ~ 14574902 (+)
G80500 NA non-coding upstream 662331 14057421 ~ 14063596 (+)
G80662 NA non-coding downstream 92956 14821755 ~ 14822248 (+)
G80663 NA non-coding downstream 94077 14822876 ~ 14865363 (+)
LOC111193202 NA non-coding downstream 234434 14963233 ~ 14969945 (+)
G80674 NA non-coding downstream 235280 14964079 ~ 14964754 (+)
G80745 NA non-coding downstream 362393 15091192 ~ 15093209 (+)
LOC103028846 LOC108431654 other upstream 191004 14513410 ~ 14534923 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other upstream 773729 13925869 ~ 13952198 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other upstream 918900 13721901 ~ 13807027 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 2446421 12223277 ~ 12279506 (+)
G79761 LOC108438749 other upstream 2649716 12064844 ~ 12076211 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other downstream 1709 14730508 ~ 14798604 (+)
LOC111193140 NA other downstream 59803 14788602 ~ 14803032 (+)
LOC111188193 LOC108431664 other downstream 77516 14806315 ~ 14835079 (+)
LOC111193203 NA other downstream 445736 15174535 ~ 15203787 (+)
G80857 NA other downstream 835188 15563987 ~ 15583331 (+)

Expression


Co-expression Network