LOC103029370 (pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638)


Basic Information

Item Value
gene id LOC103029370
gene name pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 14730508 ~ 14798604 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU108643
GGTTCAAGGTATTTGCTGATTATGAGGCTTACATCAGCTGTCAGGAGAAGGTCAACAACCTTTACAAGAACCCAAAAGACTGGACCAAGAAGGTGATCAGAAACATTGCAGCTTCTGGCAAATTCTCCAGCGACCGCACCATCTCTGAGTACGCTCGGGAAATCTGGGGGGTGGAGCCATCGGCTGTGAAGATACCTCCACCCAACGAGCCTCGAGACTGAGAGGCCAGACGTGGTTGAATTGGCCAATGATAATTGGTGATGCCGGCCAAATCcctccctgttttttttacatccttTTGTTGTCTCCTGTCTAAAGAATTTCAAGAATTGTAATTGCTCTGAATTTATAGTTCAGTTTGGTTGCAGCTTTACTGTCCATGACcattatctctcactctcttaacATGACCAGGGAAGGCCTTTCTGAGACCAagctgatgtttaaaaaaatacattcatagTATATCACCATTTACATACCTAGAGATTGAACCACAGCTCATTGTGTTTGTGTACTGTTCTGGTTTAATAGACAACTCTTGGCCAAGAGATCaaagattgcgttttttttgcgcccgcgtcccaattcactagccagggcagcggtctgccacaaatttgattggcagaggagagcgtttgaagattttacaccacacg
>XM_022672477.1
gttctttttctttaaagagTCGGTTCAAAGCATCGACTCGTTTCTCACTCCAGGAAGCCCTGCTCGCTCGGAGGCGGAGTGAAGTTTTGCTCCTGGCCGTGATAAAGTCTCCGGGACCCTGCAGCGCTCCTCCACATTTCCCCTTACGGAGCTCCAGCCATGGCGAAGCCGCTGAGTGACCAAGACCGCCGCAAGCAGATCAGCGTGCGCGGCATCGCGGGGGTCGGAGACGTCGCTGAGATCAAGAAGGGCTTCAACAGGCACCTGCACTTCACGCTGGTGAAGGACAGGAACGTCGCCACGCCACGGGACTACTACTTCGCCCTCGCGCACACGGTCCGGGACCACCTGGTGGGCCGCTGGATCCGGACCCAGCAGTACTACTACGAGAAGGACCCCAAGCGTGTCCACTACCTTTCCTTGGAGTTCTACATGGGCAGAACTCTGCAGAACACCATGATTAACCTGGGCCTGCAAAATGCCTGTGATGAAGCCATCTATCAGCTGGGACTGGACTTGGAAGAGCTGGAGGAGATAGAGGAGGATGCTGGACTGGGCAATGGTGGATTGGGGCGACTTGCAGCTTGTTTCCTGGACTCCATGGCCACACTGGGTCTGGCAGCGTATGGTTATGGCATCCGCTATGAGTTTGGAATCTTTAACCAGAAGATTTCTCATGGTTGGCAGGTGGAGGAAGCAGATGATTGGCTACGCTATGGCAACCCCTGGGAAAAAGCCCGTCCGGAGTACATGCTGCCAGTGCATTTCTATGGTAGAGTGGAACAGACAGGAGATGGGCCAAAGTGGGTGGACACCCAGGTGATCCTGGCAATGCCATATGACACTCCTGTTCCCGGCTACAAGAACAACACGGTCAACACAATGAGACTGTGGTCAGCCAAAGCCCCCAATGACTTCAACCTGCAGGAGTTTAATGTTGGGGACTATATCCAGGCTGTCCTGGACAGGAACCTGGCTGAGAACATCTCCAGAGTTCTGTACCCCAATGATAATtTTTTCGAGGGTAAGGAGCTGCGCTTGAAGCAGGAATATTTTGTGGTGGCCGCCACCCTGCAGGACATCATCAGACGCTTTAAATCCTCCAAGTTCGGCTGCCGGGACCCTATACGCACTTCCCTCGAGAGCTTTCCTGATAAGgTGGCGATCCAGTTGAATGACACTCATCCTGCGCTGGCTATTCCTGAGCTCATGAGGATATTCGTGGATGTGGAGAAACTGGGCTGGGAGAAGGCCTGGGAGATTACCACAAAAACCTGCGCATACACCAACCACACCGTGCTGCCGGAGGCTCTGGAGCGCTGGCCTGTCTACATGTTCGAGAAACTTCTACCCAGACACTTAATGATCATCTATGAGATCAATAAGAGGCACCTGGATAGAATAGCAGCGCTGTACCCCGGCGATACGGATCGTTTGCGGAGGATGTCTCTGATCGAGGAGGGTGATCCGAAGAGGATTAACATGGCTCACCTGTGTGTGGTGGGCTCTCACGCAGTGAACGGAGTCGCTCGCATACACTCGGAGATCGTGAAAGACACAGTGTTTAAAGACTTTTACGAAGTGGAGCCGGAAAAGTTCCAGAACAAGACAAACGGAATCACACCCCGCCGCTGGCTGCTGCTCTGCAACCCTGGCCTGGCTGAACTCATCGCTGAgagttcagccactgatctgTTCGAGCTGAAGAAGCTGCTGAATTACGTTAATGATGAGGCATTCATCAGGGACGTGGCCAAAGTCAAGCAGGAGAATAAGCAGAAGTTAGCTGCATATCTGGAAAAGGAGTATAAGGTGAAGATCAATCCTGAGTCCATCTTCGACATTCAGGTCAAAAGAATCCACGAGTACAAGAGGCAGCTGCTCAACTGCCTCCACATCATCACCTACTATAACAGAATCAAAAAAGACCCAAACAAAAAATTTGTTCCAAGAACAATAATGATTGGAGGAAAGGCTGCACCCGGGTATCACATGGCTAAGATGATCATAAAGCTGATCACCTCGGTGGGGAACGTGGTGAATAATGACCCTGTGGTGGGAGACCGGCTGAAGGTGATTTTCCTAGAGAACTACAAAGTTTCCCTCGCAGAGAAAGTGATCCCAGCAGCAGATCTGTCAGAGCAGATCTCCACGGCGGGCACAGAAGCTTCCGGAACAGGAAACATGAAGTTCATGCTGAATGGAGCTCTGACCATCGGCACCATGGACGGAGCCAATGTGGAGATGGCTGAGGAGGCCGGGGAGGAGAACCTCTTCATCTTCGGCATGAGAGTGGAGGATGTGGAGGCCATGGACCGCAAAGGATATAATGCTCAAGAGTACTATGACCGTCTACCGGAGCTCCGCCAGGTGATGGATCAGATCCGTACCGGCTTCTTCAGCCCTGCAGAACCAGAGATGTTTAAAGACATTGTCAACATGCTCATGAATCATGATCGGTTCAAGGTATTTGCTGATTATGAGGCTTACATCAGCTGTCAGGAGAAGGTCAACAACCTTTACAAGAACCCAAAAGACTGGACCAAGAAGGTGATCAGAAACATTGCAGCTTCTGGCAAATTCTCCAGCGACCGCACCATCTCTGAGTACGCTCGGGAAATCTGGGGGGTGGAGCCATCGGCTGTGAAGATACCTCCACCCAACGAGCCTCGAGACTGAGAGGCCAGACGTGGTTGAATTGGCCAATGATAATTGGTGATGCCGGCCAAATCcctccctgttttttttacatccttTTGTTGTCTCCTGTCTAAAGAATTTCAAGAATTGTAATTGCTCTGAATTTATAGTTCAGTTTGGTTGCAGCTTTACTGTCCATGACcattatctctcactctcttaacATGACCAGGGAAGGCCTTTCTGAGACCAagctgatgtttaaaaaaatacattcatagTATATCACCATTTACATACCTAGAGATTGAACCACAGCTCATTGTGTTTGTGTACTGTTCTGGTTTAATAGACAACTCTTGGCCAAGAGATCaaagattgtgtttttttttctgattgttaACAGTGCTTTATTGCCTTACccctgtactgtacatcataTCTCAGTGCCTTTACTCATAGCTGTCCAGTCTTTAATCCATTGTCTGCTCTGGTCATTGGTAATTAATAGAGCTGTCAATATAATCGTTTGGCCAGTTATATTCTTGATCTGGATATAAAGACCTCTGGTGTGTTGCGAGATGTGAGATCATCtcttaaacacaaacaaatgatGATCAGCCCAAAATGCCTTCTATTCTATTAGGAATCCTGACTGAATGTAGCCTCAGACTAggcttgcactttttttttactgctattgctttaacactttaacatttatttagcaCTTAGCATTATTCCTCACAGAGCTGTTTTGCACTTTAGCTAGCATTTGAGCTTCTTAAGCTTAGCATAGCGAGCATATTCTATATTATGACTCCTTTCCTATAGATTTGCTCATTCTCCTCACCAGCCTCTTATATCAGTTCATTCAGTTGTGTGTCTCCCACTAAGGCTTTGATGGACAACTGCATAATGTGGTTTATAAGTAAATGCAACCACATTCTGAACTGGATGATGTCCAATAATTTCAGCGTTTTAACATATTGATCTTAATATAACAGCTCTGTTAAagcattatacatttatttacacatttgaAACTGAagcaaatacataaataatataatcatatcagtatgcatgtgtgtgcatgtgttgtcTGACTGGTTTTGCACAATGAGCTGCTTCATTGAGGCCTTTACACTCTTtaaacagtactgtatgtatggagagaatgagagaataaAACTGcttcaaaaacaaaactgttacTGTTCTGAAATGTTTTGCTTTAGTGTTTGATAGTGCTGGGAGAATGTGGGGATTACTAAAACACTTCCTAACATACAGGCAGATTCGGAAGTATTTAAACAGCCTTTTttgatcctttttttttctctgtacagCACCTCAGTGGGTTTGAAAAACAATGTTTGAGCCTGTGAAAATTGATTTGGGTTCCGTAGTAAATGCCGGGTGATAGAAAAATCCCTAACTcattaaatcacatttatgTTTGTTGACTCTGCATTTTGTAAGTCATCGTCATGATTGCAGTGTGTTGAAGTATTAAGACCCCTTTGGCATTTTCACATGTTTTTCACATTAAACCAACAAACCTAAA

Function

symbol description
pygb Predicted to enable glycogen phosphorylase activity and pyridoxal phosphate binding activity. Predicted to be involved in glycogen catabolic process. Predicted to act upstream of or within glycogen metabolic process. Predicted to be active in cytoplasm. Is expressed in several structures, including eye; gill; heart; integument; and pleuroperitoneal region. Orthologous to human PYGB (glycogen phosphorylase B).

NR:

description
PREDICTED: glycogen phosphorylase, brain form

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0008184 glycogen phosphorylase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K00688 PYG, glgP; glycogen phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
TU108643 False 662 lncRNA 0.45 3 14757277 14798604
XM_022672477.1 True 4210 mRNA 0.47 20 14730508 14759945

Neighbor

gene id symbol gene type direction distance location
entpd6 entpd6 coding upstream 7831 14695593 ~ 14722677 (+)
LOC103027375 LOC108431653 coding upstream 219478 14495258 ~ 14511030 (+)
LOC103027082 ccdc6a,ccdc6,LOC108431652,LOC105910584,LOC107717103,LOC107663299,LOC107671115 coding upstream 251609 14451121 ~ 14478899 (+)
htr1d htr1d,LOC108269542,LOC107719539,LOC107590957,LOC107583484 coding upstream 369272 14289248 ~ 14361236 (+)
rpl13a rpl13a,LOC106610677,LOC107654893 coding upstream 612858 14114066 ~ 14117650 (+)
LOC103032735 LOC103032735,LOC108431665,LOC108270066,LOC107715976,LOC107583272,LOC107720922,LOC107670885,LOC107583566,LOC107654900 coding downstream 37878 14836482 ~ 14879706 (+)
peli1 peli1,peli1b,LOC107715974,LOC107583279,LOC107654901,LOC107670869,LOC107583565 coding downstream 93823 14892427 ~ 14951079 (+)
wdpcp wdpcp coding downstream 225865 15024469 ~ 15152481 (+)
LOC111193204 NA coding downstream 708776 15507380 ~ 15542286 (+)
eno4 NA coding downstream 883769 15682373 ~ 15704118 (+)
G80590 ube2d1a,LOC103029158,LOC108270474,LOC108431657,LOC107717106,LOC107553913,LOC107663272,LOC107733527,LOC105911631,LOC107583697 non-coding upstream 84141 14640117 ~ 14646367 (+)
G80588 bicc1,LOC108431656 non-coding upstream 122978 14593099 ~ 14607530 (+)
G80580 NA non-coding upstream 151444 14577324 ~ 14579064 (+)
G80578 NA non-coding upstream 155606 14573582 ~ 14574902 (+)
G80500 NA non-coding upstream 666912 14057421 ~ 14063596 (+)
G80662 NA non-coding downstream 23151 14821755 ~ 14822248 (+)
G80663 NA non-coding downstream 24272 14822876 ~ 14865363 (+)
LOC111193202 NA non-coding downstream 164629 14963233 ~ 14969945 (+)
G80674 NA non-coding downstream 165475 14964079 ~ 14964754 (+)
G80745 NA non-coding downstream 292588 15091192 ~ 15093209 (+)
G80648 NA other upstream 1709 14725927 ~ 14728799 (+)
LOC103028846 LOC108431654 other upstream 195585 14513410 ~ 14534923 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other upstream 778310 13925869 ~ 13952198 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other upstream 923481 13721901 ~ 13807027 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 2451002 12223277 ~ 12279506 (+)
LOC111188193 LOC108431664 other downstream 7711 14806315 ~ 14835079 (+)
LOC111193203 NA other downstream 375931 15174535 ~ 15203787 (+)
G80857 NA other downstream 765383 15563987 ~ 15583331 (+)
cmpk2 cmpk2 other downstream 3228703 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 3661519 18460123 ~ 18469635 (+)

Expression


Co-expression Network