LOC111193140


Basic Information

Item Value
gene id LOC111193140
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 14788602 ~ 14803032 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU108651
GTTCACACTCAGCTGCACATTTGTACCTTTGGCTGATTGAATCAATCTACCGAGAACCAGATTTGCTGGGTTATTTGAACCACAGACTGAATATGGCAAGTTCTGCAGATCATGGGGTTGTGATtaaaaagagacaaaacaaTCGTGGATTGGAAGAGTACTTCATTGATGGGAAGCATGTGAGTGTAGAAGACCTAAGAAAACTCTTGGAACTTGTTGCAGAGAAACCGAAGATACTGGATTACTTGGTTTCAGACAAGCCAGAATACCCATCTCCTGTAGAATTTCATGTCTCAGATGTGTCCCATGTTACTGATGCAGTACCCTTCCATAAGATATTAGAGTCAGGGGGATTTAACCCCCCTGGTTCTAATCTATCGTGGTGGTCGTTAAATATTAAAGAAGAGGAGATCAGATCTGCAGAGAAACGCTACTTACAGAAGATCTTCCAGAATCAGTCTCAAGAGCAGATTGAAAATCTTGAGAGATTCCTGAACAGATTCACCAACTCACCAGAATTCCAGTCTGAGTCCCGTTACGGGAACTATCGCTTTACCTTTCCCCTGGCTGAGCTGATGAAAATGTACCAGGAGCAGCactgtggaggagaagaaccTGTTCTCAGAGTGATGAAGACCATGTTCTACAAACAGGAGATT
>XM_022672490.1
TTTGTTCTCAGCTCCACACTTGTAGGTTGTGTTCAGTCAGCTGAGGACCAGATTTACTTACTGTTAAAAGCTTCAACCACAGACTGAACATGGCAACTGCGAAAGAAACTGCTCCTTCACCACAGgtTGTGTTTGACGTAAACACAAATGCACGTGGAATTACGGAAATCTCAGTGCAGGGGAAGCATGTGAGTGTAGAAGATCTAAAAAATCACATCTTGGAAGATACTACAATATCGAAACGGCTGAGCTGAAAagacactgacaaaaaaaaacagagtgaatCCAAAGATACTGGATAACTTGGTTTCAGTCATGCCAGAATACCCATCTCCTGTAAAATTTCATGTCTCAGATGTGTCCCATGTTACTGACGAAAAACCCTTTCAACAGATATTAGAGTCAGAGGGATTTAACCCCCCTGGTTCTAATCTATCGTGGTGGTCGTTAAATATTAAAGAAGAGGAGATCAGATCTGCAGAGAAACGCTACTTACAGAAGATCTTCCAGAATCAGGCACAAGAGCAGATTGAAAATCACGATGGATTCCTTTACAGATTCACCAACTCACCAGCGTTCCAGTCTGAGTCCCGTTACGGTAACTATCGCTTTACCTTTCCCCTGGCTGAGCTGATGAAAATGTACCAGGAGCAGCactgtggaggagaagaaccTGTTCTCAGAGTGATGAAGACCATGTTCTACAAACAGGAGATTGTGTATGCTGTGCTGATTAACATTCCTCAACCCAGTGAGACAGTAAAGAGAGAATTTGAAAGTCTTCCATCTCTTGAGAAAAACAGTGAATTTGTTCAATATCTGGAGGGGGGGAAAGTTATCTGGAGTGCCCAGGCCATTTCAGATGATCTTAGGTTCAGCCTTTTAGTAAACACAGATGAAGCAAGAGTTGAAATACAACCTGTTGGTGGCAAAAAATGCTGGTATGTGTGGGATCATGTGTGCTTGGCCTTCTATTTACCTGACAATGCCCTGAAAATTCCAAGAAGAAGACTTATTGAAGCCACTGAAGCCTGCAAACTACAGGAAATACATCTCCTAAGACCCGATTCAGCTGCGGCAAGGGAAGCACGGTTTAAAGGGGCAAAGAAGGCGGTAGAAGAGCTAAAAAAGGAGCTTAATGACGATGCTGAACATGTGAATGTATTAGGAAATTAATtatatcaaagaaaaaaattacattagtttaattaaataaatcctGTGTCACTTCACAAATTAAGGATGGACAATTCTGAGTAAGTTTCCTAATCAAGACAAAAAAGTTAGTTTCCAAGTCAAACAAATAATCAGCCAGTTTATTAATCAATACAGACAAGCCCTAAGTCGGTGTCCAAATCAATTTAAATAAGCCTTCAGTCAAGAAAATTTGCAGTTTTGTAGCAACTATACTCAATTATGTTGCTATGCTTTTTGGAGCGATACATCGTTTTAAGACTTTATTTTTTAGCCAATCGTTTTTAGAACCTTTAACCAGATGTTTTTGGACTTATCAGCTAAAATATTGGCATTCCTCCATTTAGCCAactgtttttggacatttttgtaCATAGCTCTATTAGCCATAGCAGCTTCCTAGCAACACAACAGCAACCACATTATATATGATAGCAACTAATAAGCAAGACATTATCAaccatattattattgtatgaaACAAAACTACTAACAAAAGGAGAACGATTTGAAAAGCAAAGAAGGAAATAGAAAAGCTGCACCTACTCAGCACTTAGGGTTTGGACATGAGgcacaaatagaaataagatTTTAAGATGAATTAGCATTacacaaacaaaatattatGTTCATGTCATTTCTTAATCTCCTGTTTTGCTGTTAGTGTAATCAACCCctggttttactgtttttttttcttttcattgtggatatactg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108651 False 659 TUCP 0.43 3 14788602 14801837
XM_022672490.1 True 1912 mRNA 0.38 2 14799833 14803032

Neighbor

gene id symbol gene type direction distance location
LOC111193201 NA coding upstream 22579 14763570 ~ 14766023 (+)
entpd6 entpd6 coding upstream 65925 14695593 ~ 14722677 (+)
LOC103027375 LOC108431653 coding upstream 277572 14495258 ~ 14511030 (+)
LOC103027082 ccdc6a,ccdc6,LOC108431652,LOC105910584,LOC107717103,LOC107663299,LOC107671115 coding upstream 309703 14451121 ~ 14478899 (+)
htr1d htr1d,LOC108269542,LOC107719539,LOC107590957,LOC107583484 coding upstream 427366 14289248 ~ 14361236 (+)
LOC103032735 LOC103032735,LOC108431665,LOC108270066,LOC107715976,LOC107583272,LOC107720922,LOC107670885,LOC107583566,LOC107654900 coding downstream 33450 14836482 ~ 14879706 (+)
peli1 peli1,peli1b,LOC107715974,LOC107583279,LOC107654901,LOC107670869,LOC107583565 coding downstream 89395 14892427 ~ 14951079 (+)
wdpcp wdpcp coding downstream 221437 15024469 ~ 15152481 (+)
LOC111193204 NA coding downstream 704348 15507380 ~ 15542286 (+)
eno4 NA coding downstream 879341 15682373 ~ 15704118 (+)
G80590 ube2d1a,LOC103029158,LOC108270474,LOC108431657,LOC107717106,LOC107553913,LOC107663272,LOC107733527,LOC105911631,LOC107583697 non-coding upstream 142235 14640117 ~ 14646367 (+)
G80588 bicc1,LOC108431656 non-coding upstream 181072 14593099 ~ 14607530 (+)
G80580 NA non-coding upstream 209538 14577324 ~ 14579064 (+)
G80578 NA non-coding upstream 213700 14573582 ~ 14574902 (+)
G80500 NA non-coding upstream 725006 14057421 ~ 14063596 (+)
G80662 NA non-coding downstream 18723 14821755 ~ 14822248 (+)
G80663 NA non-coding downstream 19844 14822876 ~ 14865363 (+)
LOC111193202 NA non-coding downstream 160201 14963233 ~ 14969945 (+)
G80674 NA non-coding downstream 161047 14964079 ~ 14964754 (+)
G80745 NA non-coding downstream 288160 15091192 ~ 15093209 (+)
G80648 NA other upstream 59803 14725927 ~ 14728799 (+)
LOC103028846 LOC108431654 other upstream 253679 14513410 ~ 14534923 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other upstream 836404 13925869 ~ 13952198 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other upstream 981575 13721901 ~ 13807027 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other upstream 2509096 12223277 ~ 12279506 (+)
LOC111188193 LOC108431664 other downstream 3283 14806315 ~ 14835079 (+)
LOC111193203 NA other downstream 371503 15174535 ~ 15203787 (+)
G80857 NA other downstream 760955 15563987 ~ 15583331 (+)
cmpk2 cmpk2 other downstream 3224275 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 3657091 18460123 ~ 18469635 (+)

Expression


Co-expression Network