G80662


Basic Information

Item Value
gene id G80662
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 14821755 ~ 14822248 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU108657
GCTAATTGAAGTGTTTTTGAGAAATCGAGAAGTGGAAATATCGAGAAAAAAAATTTGCCTGGTGCTGTTATCATCAAAATCCTTATACTTTCTACTAATattcactctaatctaactatAACTGAAAAGAAGACTCTTGTGTGAATTAAATTGATttctttatattcaattttacaaaatatgaagaaaaaaaaaaaaacaggtgctgGGAAAAGTTTAATCAAAACATGAAGATATGCAAATTCTGGAAGCATTTTTGAGCAGCTTAATTCACTTTTGATTTAAAGATAAATGATAGCATGTGGCTGTCTCCTaacataactgtgttataacaagTGAAAGGGAAACTGACAAAAACGGAgacaaaacacatacatacgAACATAGGctggggttcaaagggttaatagATAAACACTGTAGTTCATTGATTTGATTGGCTCTCTTGTTGTTTATTCCCCTCTGTTTAAATCCAGAGACTGATATTCCTAGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108657 True 494 lncRNA 0.32 1 14821755 14822248

Neighbor

gene id symbol gene type direction distance location
LOC111193201 NA coding upstream 55732 14763570 ~ 14766023 (+)
entpd6 entpd6 coding upstream 99078 14695593 ~ 14722677 (+)
LOC103027375 LOC108431653 coding upstream 310725 14495258 ~ 14511030 (+)
LOC103027082 ccdc6a,ccdc6,LOC108431652,LOC105910584,LOC107717103,LOC107663299,LOC107671115 coding upstream 342856 14451121 ~ 14478899 (+)
htr1d htr1d,LOC108269542,LOC107719539,LOC107590957,LOC107583484 coding upstream 460519 14289248 ~ 14361236 (+)
LOC103032735 LOC103032735,LOC108431665,LOC108270066,LOC107715976,LOC107583272,LOC107720922,LOC107670885,LOC107583566,LOC107654900 coding downstream 14234 14836482 ~ 14879706 (+)
peli1 peli1,peli1b,LOC107715974,LOC107583279,LOC107654901,LOC107670869,LOC107583565 coding downstream 70179 14892427 ~ 14951079 (+)
wdpcp wdpcp coding downstream 202221 15024469 ~ 15152481 (+)
LOC111193204 NA coding downstream 685132 15507380 ~ 15542286 (+)
eno4 NA coding downstream 860125 15682373 ~ 15704118 (+)
G80590 ube2d1a,LOC103029158,LOC108270474,LOC108431657,LOC107717106,LOC107553913,LOC107663272,LOC107733527,LOC105911631,LOC107583697 non-coding upstream 175388 14640117 ~ 14646367 (+)
G80588 bicc1,LOC108431656 non-coding upstream 214225 14593099 ~ 14607530 (+)
G80580 NA non-coding upstream 242691 14577324 ~ 14579064 (+)
G80578 NA non-coding upstream 246853 14573582 ~ 14574902 (+)
G80500 NA non-coding upstream 758159 14057421 ~ 14063596 (+)
G80663 NA non-coding downstream 628 14822876 ~ 14865363 (+)
LOC111193202 NA non-coding downstream 140985 14963233 ~ 14969945 (+)
G80674 NA non-coding downstream 141831 14964079 ~ 14964754 (+)
G80745 NA non-coding downstream 268944 15091192 ~ 15093209 (+)
G80787 ehbp1 non-coding downstream 432166 15254414 ~ 15259347 (+)
LOC111193140 NA other upstream 18723 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 23151 14730508 ~ 14798604 (+)
G80648 NA other upstream 92956 14725927 ~ 14728799 (+)
LOC103028846 LOC108431654 other upstream 286832 14513410 ~ 14534923 (+)
LOC103026193 reep3,LOC108431646,LOC105906120,LOC102789435 other upstream 869557 13925869 ~ 13952198 (+)
LOC111193203 NA other downstream 352287 15174535 ~ 15203787 (+)
G80857 NA other downstream 741739 15563987 ~ 15583331 (+)
cmpk2 cmpk2 other downstream 3205059 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 3637875 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 3689374 18511622 ~ 18520947 (+)

Expression


Co-expression Network