G80887


Basic Information

Item Value
gene id G80887
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 15719571 ~ 15721009 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU108936
TTTCAATCATTAGTTATctaaataagtataaataagtaaaataagcaGGTACCAGAATTCCTTTAAGCTCCTGAATGGCAGAACTGGATCCTATTCGCTCCCTCTgcttcaaaaaaaaacaaaaaaaacatcagaaatgtTCATTGATTTCACCTTTGTAAAGCTTTGAGACATCTCTTTAATATAACGTTTAATTTTTGTACAGGCGATTGTACACGTATCGATCTgtgcatgtgaggcgtttcagggacagatttgttcacattacacacagatacagctcacttacatttaaaatgtaaatgtgaaccatcaagacatacaaatctgatttaatccaatctgagcaaaaaatcagatctgagcaatgtggcttgtaatgtgaatgtaacCTAATTGTGGTTGGGGGATTGCCATGTTAGTCAACTGTGGAGCGTCGAAAGTGGCAACGATAATCAGAGAAACTGCACTCCTTATCACTGGTTAATTGCAGTCCGGCACCTTTAAAACAAGTAGATGTGCCAGACAGGGTGAAAACAACTTGACATAGATGAAAACAACCGATGCCATCAGGGCAGTGGGAaagtacacaaataaatacaactgTAACGttacaatatataacaatatatatatatatataaatataataatccaCACTAGATATGGATTACatgaatatgtaatattggataattttcctcaaatataatataaaaggcCAAGTAAAATATAGCAAATACAAAAACCAGAAAAGAAAtagaagaaaggaagaaaagtcAGCAGTAAGTGATCATTTACACAGGATAAATTAGAACTATGTGTCTATGTGcactaggcctGGTacgtattatttacagaatctatcacagacaggcgttttttagcgGCGTCAATTCACTGCAGAGCTGAATGCAATCAGCCTCCGTagccgggctacgtcagtgcgtgatgacgtacacacaggcacgtagccagctaggctaggctaggctccaCATCGCATCTAAACTGTCCCGCGATGAAGCTCGGCTGCGCTCCGGTCCGCATCTAAACCCTTCCgtgatgaagcgaaaccgaccctaaccaaGCGGATCTCGGCcgcgctccgctccgcacctagaATGTCCCGCGATGAAGCTCGGCTGCGCTCCAGTCCGgtctgttccaccacttcaagcagtttcactacacacaatatctgaagcacttttgtagtttatgttgtatctaagttatttatagttgatataggtttgtttatttgacagggatatcatgttccttttatatatgtgaaggctttttgtattccttatcctggttgaagcacttttgttttgatctgttaaatatgtttacaaaagaataagaagctctgcctctgttgtaatgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108936 True 1396 lncRNA 0.39 2 15719571 15721009

Neighbor

gene id symbol gene type direction distance location
eno4 NA coding upstream 15453 15682373 ~ 15704118 (+)
LOC111193204 NA coding upstream 177285 15507380 ~ 15542286 (+)
wdpcp wdpcp coding upstream 567090 15024469 ~ 15152481 (+)
peli1 peli1,peli1b,LOC107715974,LOC107583279,LOC107654901,LOC107670869,LOC107583565 coding upstream 768492 14892427 ~ 14951079 (+)
LOC103032735 LOC103032735,LOC108431665,LOC108270066,LOC107715976,LOC107583272,LOC107720922,LOC107670885,LOC107583566,LOC107654900 coding upstream 839865 14836482 ~ 14879706 (+)
pla2g4f NA coding downstream 143474 15864483 ~ 15891088 (+)
kcnk18 NA coding downstream 176515 15897524 ~ 15920726 (+)
LOC103040417 ctsb,LOC108433939,LOC107733172,LOC102299207,LOC107752788 coding downstream 218394 15939403 ~ 15947994 (+)
LOC111193130 NA coding downstream 705516 16426525 ~ 16440795 (+)
dnal1 dnal1 coding downstream 742892 16463901 ~ 16467758 (+)
G80881 NA non-coding upstream 8408 15709585 ~ 15711163 (+)
G80869 NA non-coding upstream 54617 15664746 ~ 15664954 (+)
G80868 NA non-coding upstream 88013 15631168 ~ 15631558 (+)
G80867 NA non-coding upstream 95452 15623839 ~ 15624119 (+)
G80864 NA non-coding upstream 98789 15598679 ~ 15620782 (+)
LOC111193205 NA non-coding downstream 5585 15726594 ~ 15729262 (+)
G80942 LOC108433938,LOC108269891,LOC105908308,LOC107674111,LOC105908357,LOC107733184,LOC107592771,LOC107752785,LOC107697773 non-coding downstream 240498 15961507 ~ 15963105 (+)
LOC111193206 NA non-coding downstream 302816 16023825 ~ 16032864 (+)
G80998 NA non-coding downstream 360309 16081318 ~ 16086958 (+)
G81011 NA non-coding downstream 443471 16164480 ~ 16170976 (+)
G80857 NA other upstream 136240 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 515784 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 884492 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 916539 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 920967 14730508 ~ 14798604 (+)
cmpk2 cmpk2 other downstream 2306298 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 2739114 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 2790613 18511622 ~ 18520947 (+)
G81704 NA other downstream 3209229 18930238 ~ 18930754 (+)
G81761 NA other downstream 3944727 19665736 ~ 19666047 (+)

Expression


Co-expression Network