LOC111193205


Basic Information

Item Value
gene id LOC111193205
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 15726594 ~ 15729262 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU108938
CGCAGGTCTTTGGCCTCAGTTTCTGCCTTGGTACATTTCTCCtgtatctctctcctctcctcctccagaAGCTCCGCCTTCTTCTCTAATAATGACAGCTGTTTCCTCCAATCAGAAGCTTGCAGTTCATCCTCCAAACGCTTTATCTATAGAagaatattacacacacatacacattatatacacatacatacacacaaacacacacatacacacacaaacacacacacacacacacacacatacacacacatacaaacaaacattatatgggtatacatacacacatacacattcccAAATCACAGTGTGTCAGATGTGTGTTTAAACTACATTACTGCATTATTAAAGGATTTCAAATTAACTCCGGCATCCAGCCAATCCCCCTAAAGAaataattacacacacagacccttTCACACTCAGCCTTTGTGTTGGgatgtatgtaagtgtgtgtgtatttagtaAAGTGCGGGTTGTCATGTTTGATGGTTGtttatatacagtATATTGATAATACAATGCTGTGTTATAatctgttgcttttttaaaggtATTACACTTATTTAtcgcaagaaaaagtatgtaaccctttggaatttcatggttttctgcataaattttacataaaatgtgatctgatctttATACAAGTTAAGGGTATCGACAAGTATGATGtgcttaaaataattacatccaaaaataaatatgtatttatctgTTCACTCCATGGACATACCTCCATCTCTGCAGAAACACCCTTAGAGATGCCCtatgacattatttttattgttttctattCTGCTCTAATAGTTTTTGTTACTGTCCACTATTTACATCTCTAcaaatttgcactgctaaattaaattattatataactgtatatttgCACTGTTTATATGGCTGACATTAGTTATCCTCACACATGCACATCAACTGCagttcattgttgttttactgtgttcaactgcactacacA
>XR_002650337.1
gtgtgtacgtgtgtgtgtgtgtgtgtgtgtgtatataccaGTAAAGCGCAGGTCTTTGGCCTCAGTTTCTGCCTTGGTACATTTCTCCtgtatctctctcctctcctcctccagaAGCTCCGCCTTCTTCTCTAATAATGACAGCTGTTTCCTCCAATCAGAAGCTTGCAGTTCATCCTCCAAACGCTTTATCTATAGAagaatattacacacacatacacattatatacacatacatacacacaaacacacacatacacacacaaacacacacacacacacacacacatacacacacatacaaacaaacattatatgggtatacatacacacatacacattcccAAATCACAGTGTGTCAGATGTGTGTTTAAACTACATTACTGCATTATTAAAGGATTTCAAATTAACTCCGGCATCCAGCCAATCCCCCTAAAGAaataattacacacacagacccttTCACACTCAGCCTTTGTGTTGGgatgtatgtaagtgtgtgtgtatttagtaAAGTGCGGGTTGTCATGTTTGATGGTTGtttatatacagtATATTGATAATACAATGCTGTGTTATAatctgttgcttttttaaaggtATTACACTTATTTAtcgcaagaaaaagtatgtaaccctttggaatttcatggttttctgcataaattttacataaaatgtgatctgatctttATACAAGTTAAGGGTATCGACAAGTATGATGtgcttaaaataattacatccaaaaataaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108938 True 979 lncRNA 0.35 2 15726640 15729262
XR_002650337.1 False 755 lncRNA 0.36 2 15726594 15728992

Neighbor

gene id symbol gene type direction distance location
eno4 NA coding upstream 22476 15682373 ~ 15704118 (+)
LOC111193204 NA coding upstream 184308 15507380 ~ 15542286 (+)
wdpcp wdpcp coding upstream 574113 15024469 ~ 15152481 (+)
peli1 peli1,peli1b,LOC107715974,LOC107583279,LOC107654901,LOC107670869,LOC107583565 coding upstream 775515 14892427 ~ 14951079 (+)
LOC103032735 LOC103032735,LOC108431665,LOC108270066,LOC107715976,LOC107583272,LOC107720922,LOC107670885,LOC107583566,LOC107654900 coding upstream 846888 14836482 ~ 14879706 (+)
pla2g4f NA coding downstream 135221 15864483 ~ 15891088 (+)
kcnk18 NA coding downstream 168262 15897524 ~ 15920726 (+)
LOC103040417 ctsb,LOC108433939,LOC107733172,LOC102299207,LOC107752788 coding downstream 210141 15939403 ~ 15947994 (+)
LOC111193130 NA coding downstream 697263 16426525 ~ 16440795 (+)
dnal1 dnal1 coding downstream 734639 16463901 ~ 16467758 (+)
G80887 NA non-coding upstream 5585 15719571 ~ 15721009 (+)
G80881 NA non-coding upstream 15431 15709585 ~ 15711163 (+)
G80869 NA non-coding upstream 61640 15664746 ~ 15664954 (+)
G80868 NA non-coding upstream 95036 15631168 ~ 15631558 (+)
G80867 NA non-coding upstream 102475 15623839 ~ 15624119 (+)
G80942 LOC108433938,LOC108269891,LOC105908308,LOC107674111,LOC105908357,LOC107733184,LOC107592771,LOC107752785,LOC107697773 non-coding downstream 232245 15961507 ~ 15963105 (+)
LOC111193206 NA non-coding downstream 294563 16023825 ~ 16032864 (+)
G80998 NA non-coding downstream 352056 16081318 ~ 16086958 (+)
G81011 NA non-coding downstream 435218 16164480 ~ 16170976 (+)
G81017 NA non-coding downstream 538045 16267307 ~ 16267608 (+)
G80857 NA other upstream 143263 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 522807 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 891515 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 923562 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 927990 14730508 ~ 14798604 (+)
cmpk2 cmpk2 other downstream 2298045 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 2730861 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 2782360 18511622 ~ 18520947 (+)
G81704 NA other downstream 3200976 18930238 ~ 18930754 (+)
G81761 NA other downstream 3936474 19665736 ~ 19666047 (+)

Expression


Co-expression Network